Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PL335_RS06675 Genome accession   NZ_CP116419
Coordinates   1344687..1345205 (-) Length   172 a.a.
NCBI ID   WP_271693606.1    Uniprot ID   -
Organism   Sulfitobacter faviae strain SCSIO W_1866     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1339687..1350205
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PL335_RS06650 (PL335_06650) - 1339826..1340806 (-) 981 WP_394401278.1 tyrosine recombinase -
  PL335_RS06655 (PL335_06655) - 1340806..1342452 (-) 1647 WP_333909708.1 hypothetical protein -
  PL335_RS06660 (PL335_06660) - 1342458..1342607 (-) 150 WP_007120408.1 hypothetical protein -
  PL335_RS06665 (PL335_06665) - 1342688..1343284 (+) 597 WP_247744652.1 shikimate kinase -
  PL335_RS06670 (PL335_06670) aroB 1343277..1344392 (+) 1116 WP_271693605.1 3-dehydroquinate synthase -
  PL335_RS06675 (PL335_06675) ssb 1344687..1345205 (-) 519 WP_271693606.1 single-stranded DNA-binding protein Machinery gene
  PL335_RS06680 (PL335_06680) - 1345486..1346031 (+) 546 WP_271689979.1 lytic transglycosylase domain-containing protein -
  PL335_RS06685 (PL335_06685) - 1346212..1346739 (+) 528 WP_209218906.1 hypothetical protein -
  PL335_RS06690 (PL335_06690) - 1346846..1348936 (-) 2091 WP_271693607.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 17660.22 Da        Isoelectric Point: 5.2704

>NTDB_id=777307 PL335_RS06675 WP_271693606.1 1344687..1345205(-) (ssb) [Sulfitobacter faviae strain SCSIO W_1866]
MAGSVNKVILIGNLGRDPEVRSFQNGGKVCNLRIATSETWKDRNTGERREKTEWHSVAIFQEGLVRVAEQYLKKGSKVYI
EGQLQTRKWQDQSGADRYSTEVVLQGFGGTLTMLDGPGGGSGGGGGGGYGGGGGGGYGGGGNDYGGGYDSGPSSSGGGGG
GGSRDLDDEIPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=777307 PL335_RS06675 WP_271693606.1 1344687..1345205(-) (ssb) [Sulfitobacter faviae strain SCSIO W_1866]
ATGGCCGGCTCAGTGAACAAAGTGATCCTTATCGGCAACCTCGGGCGCGACCCCGAGGTGCGGTCGTTCCAGAACGGCGG
CAAAGTGTGCAACCTGCGCATCGCCACCTCGGAGACATGGAAAGACCGCAACACCGGTGAGCGCCGCGAGAAGACCGAAT
GGCATTCGGTGGCGATCTTTCAAGAAGGGCTCGTCCGCGTGGCCGAGCAATACCTCAAGAAGGGCTCCAAAGTGTATATC
GAGGGCCAGTTGCAAACCCGCAAATGGCAGGACCAATCGGGCGCAGACCGCTATAGCACCGAAGTCGTGCTGCAAGGCTT
TGGCGGTACGCTGACCATGCTCGACGGTCCCGGCGGCGGCTCCGGCGGCGGTGGTGGCGGCGGCTACGGTGGTGGCGGCG
GTGGCGGCTACGGCGGTGGCGGCAACGACTACGGCGGCGGCTATGACAGCGGCCCGTCCTCTTCGGGCGGCGGTGGCGGC
GGCGGCAGCCGTGATCTGGACGACGAGATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

52.841

100

0.541
  ssb Glaesserella parasuis strain SC1401

46.237

100

0.5
  ssb Neisseria gonorrhoeae MS11

41.209

100

0.436
  ssb Neisseria meningitidis MC58

41.209

100

0.436