Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   PH545_RS08410 Genome accession   NZ_CP116414
Coordinates   1759934..1760521 (-) Length   195 a.a.
NCBI ID   WP_005444533.1    Uniprot ID   A0A9X3RTZ3
Organism   Vibrio harveyi strain K2014767     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1754934..1765521
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PH545_RS08390 (PH545_08390) - 1755085..1756347 (-) 1263 WP_289881488.1 DUF945 family protein -
  PH545_RS08395 (PH545_08395) - 1756533..1758473 (+) 1941 WP_009698121.1 ATP-binding protein -
  PH545_RS08400 (PH545_08400) - 1758470..1758967 (+) 498 WP_289881489.1 response regulator -
  PH545_RS08405 (PH545_08405) - 1759175..1759723 (+) 549 WP_005442235.1 hypothetical protein -
  PH545_RS08410 (PH545_08410) tfoX 1759934..1760521 (-) 588 WP_005444533.1 TfoX/Sxy family DNA transformation protein Regulator
  PH545_RS08415 (PH545_08415) - 1760892..1761812 (+) 921 WP_005444535.1 HDOD domain-containing protein -
  PH545_RS08420 (PH545_08420) - 1761919..1762824 (+) 906 WP_289881490.1 lysine exporter LysO family protein -
  PH545_RS08425 (PH545_08425) - 1763036..1763548 (+) 513 Protein_1575 hypothetical protein -
  PH545_RS08430 (PH545_08430) panP 1763670..1765316 (+) 1647 WP_047513619.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 22312.52 Da        Isoelectric Point: 6.4656

>NTDB_id=777282 PH545_RS08410 WP_005444533.1 1759934..1760521(-) (tfoX) [Vibrio harveyi strain K2014767]
MDMTDQAFFNYVSNFSEYQKRSMFGGIGLFSNDAMFALVSNDCCYLRGGNGLDEEFTQLNCEKYKHVKKQTTATVNYYDV
TDLFDSGFAGLDALLQKSIECSIKERKYQKSSASRRLRDLPNMQLTLERMVKKAGIDDVETFLELGPVEVFNKVRVTYGS
DVDVKLLWKFAGATDGIHWKLLQEPRKKQLLAMCE

Nucleotide


Download         Length: 588 bp        

>NTDB_id=777282 PH545_RS08410 WP_005444533.1 1759934..1760521(-) (tfoX) [Vibrio harveyi strain K2014767]
ATGGACATGACAGACCAAGCTTTTTTTAACTATGTAAGCAATTTTAGTGAGTACCAAAAACGTTCAATGTTTGGCGGGAT
TGGTTTATTCAGCAACGACGCAATGTTCGCACTAGTAAGTAACGACTGTTGTTATTTACGTGGTGGTAACGGGTTAGATG
AAGAATTTACTCAACTAAACTGTGAAAAATATAAGCACGTCAAAAAACAAACGACGGCAACCGTTAACTACTATGATGTA
ACCGATCTATTTGACTCAGGTTTTGCGGGTCTAGACGCGTTGTTACAAAAATCGATTGAATGTTCTATTAAGGAACGTAA
ATACCAAAAGTCTTCAGCCAGTAGACGTTTGCGTGATCTACCAAATATGCAGTTGACGCTAGAGCGTATGGTCAAAAAAG
CAGGTATTGATGACGTAGAAACGTTTTTGGAACTTGGACCAGTAGAAGTATTTAATAAAGTAAGAGTGACATACGGTAGT
GATGTTGATGTAAAGCTTCTATGGAAGTTTGCTGGCGCCACTGATGGTATTCACTGGAAACTGCTCCAAGAACCACGCAA
GAAACAACTGCTGGCAATGTGTGAATAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(114-192)

TfoX N-terminal domain (TfoX_N)

(11-100)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio campbellii strain DS40M4

96.41

100

0.964
  tfoX Vibrio parahaemolyticus RIMD 2210633

91.282

100

0.913
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

68.912

98.974

0.682
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

68.912

98.974

0.682
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

68.912

98.974

0.682
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

68.912

98.974

0.682
  tfoX Vibrio cholerae strain A1552

68.912

98.974

0.682
  tfoX Aliivibrio fischeri ES114

59.686

97.949

0.585