Detailed information NTG0777275

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PH545_RS01400
• Genome accession: NZ_CP116414
• Coordinates: 262263..263132 (-)
• Length: 289 a.a.
• NCBI ID: WP_045488712.1
• Uniprot ID: A0A9X3MI55
• Organism: Vibrio harveyi strain K2014767
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 257263..268132

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PH545_RS01365 (PH545_01365)	rpsP	258066..258314 (+)	249	WP_289880836.1	30S ribosomal protein S16	-
PH545_RS01370 (PH545_01370)	rimM	258343..258891 (+)	549	WP_005446245.1	ribosome maturation factor RimM	-
PH545_RS01375 (PH545_01375)	trmD	258919..259662 (+)	744	WP_289880838.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
PH545_RS01380 (PH545_01380)	rplS	259704..260057 (+)	354	WP_005379971.1	50S ribosomal protein L19	-
PH545_RS01385 (PH545_01385)	yacG	260623..260823 (-)	201	WP_026000212.1	DNA gyrase inhibitor YacG	-
PH545_RS01390 (PH545_01390)	zapD	260880..261620 (-)	741	WP_038897986.1	cell division protein ZapD	-
PH545_RS01395 (PH545_01395)	coaE	261648..262262 (-)	615	WP_289880840.1	dephospho-CoA kinase	-
PH545_RS01400 (PH545_01400)	pilD	262263..263132 (-)	870	WP_045488712.1	A24 family peptidase	Machinery gene
PH545_RS01405 (PH545_01405)	pilC	263205..264428 (-)	1224	WP_005446256.1	type II secretion system F family protein	Machinery gene
PH545_RS01410 (PH545_01410)	pilB	264462..266147 (-)	1686	WP_017189132.1	type IV-A pilus assembly ATPase PilB	Machinery gene
PH545_RS01415 (PH545_01415)	pilA	266151..266615 (-)	465	WP_005446258.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	Machinery gene
PH545_RS01420 (PH545_01420)	nadC	266880..267767 (-)	888	WP_053052948.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32576.76 Da
• Isoelectric Point: 7.5715

>NTDB_id=777275 PH545_RS01400 WP_045488712.1 262263..263132(-) (pilD) [Vibrio harveyi strain K2014767]
MEVFQYYPWLFVVFTAIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIEPPKETLTLSVPRSSCQQCGTHIRIR
DNIPVISWLLLKGKCHNCQSPISARYPLIELLTAFCSGFIAFHFGFSYFTVALVFFTFVLIAATFIDLDTMLLPDQLTLP
LMWAGIALALAGISHVSLQDSIIGAMAGYLCLWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLIQLRLQKQGIEKAFPFGPYLAIAGWVSLIWGNQILNWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=777275 PH545_RS01400 WP_045488712.1 262263..263132(-) (pilD) [Vibrio harveyi strain K2014767]
ATGGAAGTATTCCAGTACTACCCATGGCTATTCGTTGTATTTACCGCTATTTTTGGTTTGATCGTGGGTAGTTTCCTCAA
CGTAGTTATTTACCGTTTACCTAAGATCATGGAACTAGAATGGCGACGCGAGTGTGCTGAATCATTCCCTGAATACAAGA
TCGAGCCACCAAAAGAGACATTAACCTTAAGCGTACCACGTTCATCTTGTCAGCAATGCGGTACACATATCCGCATTAGA
GACAATATCCCTGTGATTAGTTGGTTATTGCTAAAAGGTAAATGCCACAACTGCCAATCGCCTATCAGTGCTCGCTACCC
TCTTATCGAACTGCTTACCGCTTTTTGTTCGGGTTTTATCGCTTTTCATTTCGGTTTTAGCTACTTCACTGTGGCGCTGG
TTTTCTTTACCTTTGTATTGATTGCTGCCACATTTATCGACCTTGATACCATGTTGCTGCCAGACCAACTCACACTACCA
TTGATGTGGGCGGGTATTGCTCTTGCTCTTGCCGGTATCAGCCATGTAAGTCTTCAAGATTCTATTATTGGAGCAATGGC
AGGCTACTTATGTCTTTGGAGTGTTTATTGGTTATTCAAACTCCTCACAGGCAAAGAGGGAATGGGCTATGGCGACTTTA
AACTCCTTGCTGCATTAGGAGCTTGGTTGGGCTGGCAATCTCTGCCGATGATCATTTTGCTTTCTTCGGTAGTAGGCGTC
ATTTTTGGTCTTATCCAACTGCGCTTGCAAAAGCAAGGTATCGAAAAAGCCTTTCCTTTTGGTCCTTACCTTGCAATTGC
AGGATGGGTGAGCCTAATTTGGGGCAATCAAATCCTCAACTGGTACTTTACGTCGATTCTAGGAGTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	96.886	100	0.969
pilD	Vibrio cholerae strain A1552	73.958	99.654	0.737
pilD	Acinetobacter baumannii D1279779	52.768	93.772	0.495
pilD	Acinetobacter nosocomialis M2	52.399	93.772	0.491
pilD	Neisseria gonorrhoeae MS11	45.652	95.502	0.436