Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaH   Type   Regulator
Locus tag   PFZ59_RS10085 Genome accession   NZ_CP116393
Coordinates   2010568..2011947 (-) Length   459 a.a.
NCBI ID   WP_208582771.1    Uniprot ID   -
Organism   Streptococcus suis strain SS/UPM/MY/F001     
Function   Required for optimal comC expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2005568..2016947
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PFZ59_RS10060 (PFZ59_10060) - 2005775..2007052 (-) 1278 WP_208582249.1 pyrimidine-nucleoside phosphorylase -
  PFZ59_RS10065 (PFZ59_10065) - 2007049..2007639 (-) 591 WP_024376492.1 class I SAM-dependent methyltransferase -
  PFZ59_RS10070 (PFZ59_10070) coaA 2007748..2008668 (+) 921 WP_208582251.1 type I pantothenate kinase -
  PFZ59_RS10075 (PFZ59_10075) rpsT 2008727..2008975 (+) 249 WP_012027069.1 30S ribosomal protein S20 -
  PFZ59_RS10080 (PFZ59_10080) - 2009238..2010467 (-) 1230 WP_277696989.1 transglutaminase domain-containing protein -
  PFZ59_RS10085 (PFZ59_10085) ciaH 2010568..2011947 (-) 1380 WP_208582771.1 HAMP domain-containing sensor histidine kinase Regulator
  PFZ59_RS10090 (PFZ59_10090) ciaR 2011940..2012611 (-) 672 WP_024385291.1 response regulator transcription factor Regulator
  PFZ59_RS10095 (PFZ59_10095) - 2012805..2013104 (-) 300 WP_277696990.1 hypothetical protein -
  PFZ59_RS10100 (PFZ59_10100) - 2013629..2014832 (+) 1204 Protein_1949 IS110 family transposase -
  PFZ59_RS10105 (PFZ59_10105) phoU 2015035..2015691 (-) 657 WP_024413748.1 phosphate signaling complex protein PhoU -
  PFZ59_RS10110 (PFZ59_10110) pstB 2015718..2016476 (-) 759 WP_029186694.1 phosphate ABC transporter ATP-binding protein PstB -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 51999.65 Da        Isoelectric Point: 6.8981

>NTDB_id=777112 PFZ59_RS10085 WP_208582771.1 2010568..2011947(-) (ciaH) [Streptococcus suis strain SS/UPM/MY/F001]
MPKRIRKLVYTDKFSFFIRYFAVFTLIFGLMTAIIFQLMRSTMYQNSDNTLKRIKEEPAMAVGFAIARTYEPNSVFILQD
SPTSEETTSSRSDSMPVPKDQKNTRDGDQLRLGVNTHVLLYSKSGEMVNPDTFTGLADLPLDKEKLGEIKEATVESSFGM
SEDYRYVTIELATDELGYYSSYDIKYATILVNVSQIKSSIETYESTVAIVMVSAWLISILASIYLSNLSMRPILISYQKQ
KDFVENASHELRTPLAVLQNRLESLFRHPEATILESSESIGSSLEEVRNMRLLTTNLLNLARRDDGLKVDMINVQPNYFD
EIFANYLMIAEENGKTLTVNNLIHQPIRTDKVLIKQLLTILFDNAMKYTDDDGRIQITANIKDKSVYFTVADNGLGISDA
DKKKIFDRFYRVDKARTRQKGGFGLGLSLAQQIIKTLGGKISVRDNQPKGTIFEVGLPK

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=777112 PFZ59_RS10085 WP_208582771.1 2010568..2011947(-) (ciaH) [Streptococcus suis strain SS/UPM/MY/F001]
ATGCCTAAGCGAATCAGAAAATTAGTGTATACGGATAAATTTTCCTTCTTTATCCGTTATTTTGCAGTATTTACCCTGAT
TTTTGGCTTGATGACAGCTATCATTTTTCAATTAATGCGTTCGACTATGTATCAAAATTCCGATAATACTTTGAAACGGA
TTAAGGAAGAACCAGCGATGGCTGTTGGTTTTGCAATCGCAAGAACCTATGAGCCCAACTCTGTCTTTATACTTCAAGAT
AGCCCAACTAGTGAAGAAACGACGAGCTCTAGATCAGATAGCATGCCTGTTCCTAAAGATCAAAAAAATACTAGAGATGG
AGATCAGCTGAGATTAGGTGTCAATACTCATGTCTTACTCTATAGTAAAAGTGGAGAAATGGTTAATCCAGATACTTTTA
CTGGTTTGGCCGACCTACCGTTAGATAAGGAAAAATTGGGCGAAATTAAGGAAGCAACGGTTGAATCAAGCTTCGGTATG
TCTGAAGATTATCGCTATGTGACGATTGAGCTGGCTACAGATGAACTAGGTTATTATTCGTCCTATGATATAAAATATGC
GACAATTTTAGTGAATGTCAGCCAGATAAAATCCTCCATTGAGACCTATGAATCGACAGTTGCTATTGTTATGGTATCAG
CTTGGCTCATTTCTATCTTGGCCAGTATTTACCTATCAAATCTTAGCATGCGTCCAATTCTAATCAGCTATCAAAAACAA
AAGGACTTTGTCGAAAATGCTAGTCATGAGTTGCGTACGCCGCTGGCTGTTCTCCAAAATCGTTTGGAGAGCCTGTTTCG
CCATCCCGAAGCGACGATTTTAGAGAGTAGTGAAAGCATCGGATCTAGTTTGGAAGAAGTTCGAAATATGCGATTATTGA
CAACGAACCTGCTCAATTTGGCTCGTCGTGATGATGGCTTAAAAGTCGATATGATCAATGTCCAACCGAACTATTTTGAT
GAAATCTTTGCTAATTACCTTATGATTGCCGAAGAAAATGGAAAAACACTAACAGTTAATAATTTGATTCATCAGCCGAT
TCGAACAGATAAGGTCCTGATTAAACAGTTGCTTACCATTTTATTTGACAATGCCATGAAGTATACCGACGATGATGGCA
GAATTCAAATTACAGCTAATATCAAGGATAAATCTGTCTACTTCACAGTTGCCGACAATGGTTTGGGAATCAGCGATGCC
GATAAGAAGAAAATCTTTGATCGCTTTTATCGAGTTGATAAGGCCAGAACACGTCAAAAAGGTGGTTTCGGTCTAGGATT
ATCGTTGGCTCAGCAAATTATTAAGACACTAGGTGGGAAAATCTCTGTTAGAGATAACCAACCGAAAGGAACTATTTTTG
AGGTAGGATTACCTAAATAA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(240-306)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(350-458)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaH Streptococcus mutans UA159

49.89

99.129

0.495
  ciaH Streptococcus pneumoniae Rx1

49.563

99.782

0.495
  ciaH Streptococcus pneumoniae D39

49.563

99.782

0.495
  ciaH Streptococcus pneumoniae R6

49.563

99.782

0.495
  ciaH Streptococcus pneumoniae TIGR4

49.563

99.782

0.495