Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   PIB33_RS13145 Genome accession   NZ_CP116391
Coordinates   2513549..2513884 (+) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus subtilis strain GXD-20     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2508549..2518884
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PIB33_RS13125 (PIB33_13125) gcvT 2509141..2510229 (-) 1089 WP_004398598.1 glycine cleavage system aminomethyltransferase GcvT -
  PIB33_RS13130 (PIB33_13130) hepAA 2510671..2512344 (+) 1674 WP_029726726.1 DEAD/DEAH box helicase -
  PIB33_RS13135 (PIB33_13135) yqhG 2512365..2513159 (+) 795 WP_015714249.1 YqhG family protein -
  PIB33_RS13140 (PIB33_13140) sinI 2513342..2513515 (+) 174 WP_003230187.1 anti-repressor SinI Regulator
  PIB33_RS13145 (PIB33_13145) sinR 2513549..2513884 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  PIB33_RS13150 (PIB33_13150) tasA 2513977..2514762 (-) 786 WP_014664586.1 biofilm matrix protein TasA -
  PIB33_RS13155 (PIB33_13155) sipW 2514826..2515398 (-) 573 WP_072692741.1 signal peptidase I SipW -
  PIB33_RS13160 (PIB33_13160) tapA 2515382..2516143 (-) 762 WP_029726724.1 amyloid fiber anchoring/assembly protein TapA -
  PIB33_RS13165 (PIB33_13165) yqzG 2516415..2516741 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  PIB33_RS13170 (PIB33_13170) spoIITA 2516783..2516962 (-) 180 WP_029726723.1 YqzE family protein -
  PIB33_RS13175 (PIB33_13175) comGG 2517034..2517408 (-) 375 WP_029726722.1 ComG operon protein ComGG Machinery gene
  PIB33_RS13180 (PIB33_13180) comGF 2517409..2517792 (-) 384 WP_032722118.1 ComG operon protein ComGF Machinery gene
  PIB33_RS13185 (PIB33_13185) comGE 2517818..2518165 (-) 348 WP_003230165.1 ComG operon protein 5 Machinery gene
  PIB33_RS13190 (PIB33_13190) comGD 2518149..2518580 (-) 432 WP_029726720.1 comG operon protein ComGD Machinery gene
  PIB33_RS13195 (PIB33_13195) comGC 2518570..2518866 (-) 297 WP_029726719.1 comG operon protein ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=777022 PIB33_RS13145 WP_003226345.1 2513549..2513884(+) (sinR) [Bacillus subtilis strain GXD-20]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=777022 PIB33_RS13145 WP_003226345.1 2513549..2513884(+) (sinR) [Bacillus subtilis strain GXD-20]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
ACAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1