Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   QU610_RS01900 Genome accession   NZ_CP129105
Coordinates   392925..393935 (-) Length   336 a.a.
NCBI ID   WP_000664489.1    Uniprot ID   -
Organism   Helicobacter pylori strain HP45k     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 387925..398935
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QU610_RS01855 (QU610_01855) - 388030..388404 (-) 375 WP_000772151.1 chemotaxis response regulator CheY -
  QU610_RS01860 (QU610_01860) - 388724..389296 (+) 573 WP_001879972.1 outer membrane protein -
  QU610_RS01870 (QU610_01870) - 389428..389835 (-) 408 WP_137296069.1 hypothetical protein -
  QU610_RS01875 (QU610_01875) - 389838..390068 (-) 231 WP_164859619.1 PP0621 family protein -
  QU610_RS01880 (QU610_01880) rsmG 390062..390598 (-) 537 WP_120833968.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  QU610_RS01885 (QU610_01885) queA 390595..391632 (-) 1038 WP_137296068.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  QU610_RS01890 (QU610_01890) tatC 391636..392382 (-) 747 WP_137296067.1 twin-arginine translocase subunit TatC -
  QU610_RS01895 (QU610_01895) tatB 392375..392857 (-) 483 WP_137296066.1 Sec-independent protein translocase protein TatB -
  QU610_RS01900 (QU610_01900) ruvB 392925..393935 (-) 1011 WP_000664489.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  QU610_RS01905 (QU610_01905) panB 393936..394748 (-) 813 WP_137296065.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  QU610_RS01910 (QU610_01910) - 394897..395619 (+) 723 WP_025453920.1 hypothetical protein -
  QU610_RS01915 (QU610_01915) - 395609..396466 (+) 858 WP_137296064.1 outer membrane beta-barrel protein -
  QU610_RS01920 (QU610_01920) - 396475..397419 (+) 945 WP_137296063.1 outer membrane protein -
  QU610_RS01925 (QU610_01925) - 397429..398751 (+) 1323 WP_170961775.1 M23 family metallopeptidase -

Sequence

Protein


Download         Length: 336 a.a.        Molecular weight: 37323.36 Da        Isoelectric Point: 6.3684

>NTDB_id=776912 QU610_RS01900 WP_000664489.1 392925..393935(-) (ruvB) [Helicobacter pylori strain HP45k]
MKERIVNLETLDFETSQEVSLRPNLWEDFIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN
IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATT
RAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAAVKLNQDIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLM
DLNITLHALNELGVNELGFDEADLAYLSLLANAQGRPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATPK
THALLKIPTLKSQTLF

Nucleotide


Download         Length: 1011 bp        

>NTDB_id=776912 QU610_RS01900 WP_000664489.1 392925..393935(-) (ruvB) [Helicobacter pylori strain HP45k]
ATGAAAGAACGGATAGTCAATTTAGAAACTTTGGATTTTGAAACTTCTCAAGAAGTGAGTTTGCGCCCCAATCTTTGGGA
AGATTTTATCGGTCAAGAAAAGATTAAAAGCAACTTGCAAATTTCTATTTGCGCGGCTAAAAAACGCCAAGAAAGTTTGG
ATCACATGCTCTTTTTTGGCCCGCCCGGTTTGGGTAAAACTTCAATCAGCCATATCATCGCTAAAGAAATGGAAACCAAT
ATCAAAATCACCGCCGCTCCCATGATAGAAAAAAGCGGTGATTTAGCCGCCATTTTGACGAATTTGCAAGCTAAAGACAT
TCTTTTTATTGATGAAATCCACCGGCTCAGCCCAGCGATTGAAGAGGTTTTATACCCGGCTATGGAAGATTTTAGGCTGG
ATATTATCATAGGCTCAGGCCCAGCGGCTCAAACCATTAAGATTGATTTACCCCCTTTCACCCTCATCGGCGCTACCACT
AGAGCCGGAATGCTCTCTAACCCCTTAAGAGACAGATTTGGCATGAGTTTTAGAATGCAATTTTATAGCCCTAGCGAACT
GGCTCTCATCATTAAAAAAGCCGCCGTTAAACTCAACCAAGACATCAAAGAAGAAAGCGCTGATGAAATCGCTAAAAGGA
GTAGAGGCACGCCAAGGATCGCTTTAAGGCTTTTAAAAAGGGTGCGCGATTTTGCGTTAGTCAAAAATTCAAGCTTGATG
GATTTGAACATCACTTTGCATGCTTTGAATGAATTAGGCGTGAATGAATTAGGCTTTGATGAGGCGGATTTAGCGTATTT
ATCTTTGTTGGCTAACGCTCAAGGACGACCGGTGGGTTTGAACACGATTGCCGCGTCTATGAGAGAAGATGAAGGCACGA
TTGAAGATGTGATTGAGCCTTTTTTACTCGCTAATGGTTATTTAGAGCGCACCGCTAAAGGCCGAATCGCCACGCCTAAA
ACCCATGCGCTTTTAAAAATCCCCACTTTAAAGTCTCAAACTTTATTTTAA

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(21-179)

RuvB AAA lid domain (AAA_lid_4)

(182-255)

RuvB C-terminal winged helix domain (WHD_RuvB)

(256-325)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Helicobacter pylori 26695

97.619

100

0.976
  ruvB Bacillus subtilis subsp. subtilis str. 168

53.56

96.131

0.515
  ruvB Streptococcus pneumoniae TIGR4

50.464

96.131

0.485
  ruvB Streptococcus pneumoniae R6

50.464

96.131

0.485
  ruvB Streptococcus pneumoniae D39

50.464

96.131

0.485
  ruvB Synechocystis sp. PCC 6803

52.475

90.179

0.473