Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   PK654_RS06700 Genome accession   NZ_CP116383
Coordinates   1423548..1424138 (+) Length   196 a.a.
NCBI ID   WP_271698426.1    Uniprot ID   -
Organism   Vibrio sp. SCSIO 43137     
Function   master regulator of natural competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1418548..1429138
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PK654_RS06680 (PK654_06680) panP 1418845..1420485 (-) 1641 WP_271698422.1 putative pyridoxal-dependent aspartate 1-decarboxylase -
  PK654_RS06685 (PK654_06685) - 1420619..1421131 (-) 513 WP_271698423.1 hypothetical protein -
  PK654_RS06690 (PK654_06690) - 1421305..1422210 (-) 906 WP_271698424.1 lysine exporter LysO family protein -
  PK654_RS06695 (PK654_06695) - 1422243..1423163 (-) 921 WP_271698425.1 HDOD domain-containing protein -
  PK654_RS06700 (PK654_06700) tfoX 1423548..1424138 (+) 591 WP_271698426.1 TfoX/Sxy family DNA transformation protein Regulator
  PK654_RS06705 (PK654_06705) - 1424315..1425343 (+) 1029 WP_271698427.1 ABC transporter permease subunit -
  PK654_RS06710 (PK654_06710) - 1425346..1426389 (+) 1044 WP_271698428.1 ABC transporter permease subunit -
  PK654_RS06715 (PK654_06715) - 1426427..1428244 (+) 1818 WP_271698824.1 extracellular solute-binding protein -
  PK654_RS06720 (PK654_06720) - 1428254..1429087 (+) 834 WP_271698429.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 22944.75 Da        Isoelectric Point: 9.7226

>NTDB_id=776855 PK654_RS06700 WP_271698426.1 1423548..1424138(+) (tfoX) [Vibrio sp. SCSIO 43137]
MTMTKMFYRYIEKFGCFQKRSMFGGIGLFVENAMYALIVDEKYFIRGGEGLDECFIRLNCDKYLHRKRQSTALVNYYNVT
ALFYSGSRELDHLIRRSIQCAIEHKKYKSSFESRRLRDLPNLNLTLERMLKRSGIADVATFFDYGAEKTFVLVKDKHGPH
INEQLLWKFAGAIDGVHWMLLPESRKKGLLEACKLN

Nucleotide


Download         Length: 591 bp        

>NTDB_id=776855 PK654_RS06700 WP_271698426.1 1423548..1424138(+) (tfoX) [Vibrio sp. SCSIO 43137]
ATGACTATGACTAAGATGTTTTATCGCTATATTGAAAAGTTTGGTTGTTTTCAAAAGCGTTCAATGTTTGGTGGGATAGG
CTTGTTTGTTGAGAACGCTATGTACGCATTGATTGTTGATGAAAAGTATTTTATTCGTGGTGGGGAGGGGCTTGATGAGT
GTTTTATCAGGCTAAATTGCGACAAATACCTCCATAGAAAAAGACAGTCTACTGCTTTGGTGAACTATTATAATGTGACT
GCTCTCTTTTATTCCGGTAGCAGGGAGTTGGATCATTTGATAAGGCGTTCCATACAGTGCGCTATTGAACATAAAAAGTA
CAAGAGCTCCTTTGAAAGCCGGCGACTAAGGGATCTGCCAAACCTAAATCTTACTCTGGAACGAATGCTGAAACGTTCCG
GTATTGCCGATGTAGCTACATTTTTCGATTATGGCGCAGAGAAAACCTTTGTGTTGGTTAAAGACAAACACGGGCCGCAC
ATTAACGAGCAACTGCTGTGGAAGTTTGCCGGGGCAATAGACGGTGTGCATTGGATGCTTTTGCCGGAGTCGAGGAAAAA
GGGTTTACTGGAAGCTTGTAAATTGAACTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(11-101)

TfoX C-terminal domain (TfoX_C)

(113-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio parahaemolyticus RIMD 2210633

55.385

99.49

0.551
  tfoX Vibrio campbellii strain DS40M4

54.872

99.49

0.546
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

52.632

96.939

0.51
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

52.632

96.939

0.51
  tfoX Vibrio cholerae strain A1552

52.632

96.939

0.51
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

52.632

96.939

0.51
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

52.632

96.939

0.51
  tfoX Aliivibrio fischeri ES114

43.85

95.408

0.418