Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PK654_RS01450 Genome accession   NZ_CP116383
Coordinates   293902..294450 (+) Length   182 a.a.
NCBI ID   WP_271697251.1    Uniprot ID   -
Organism   Vibrio sp. SCSIO 43137     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 288902..299450
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PK654_RS01440 (PK654_01440) galU 291868..292743 (-) 876 WP_271697247.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  PK654_RS01445 (PK654_01445) - 292853..293230 (-) 378 WP_271697249.1 LuxR C-terminal-related transcriptional regulator -
  PK654_RS01450 (PK654_01450) ssb 293902..294450 (+) 549 WP_271697251.1 single-stranded DNA-binding protein Machinery gene
  PK654_RS01455 (PK654_01455) csrD 294610..296601 (+) 1992 WP_271697253.1 RNase E specificity factor CsrD -
  PK654_RS01460 (PK654_01460) - 296617..298083 (+) 1467 WP_271697255.1 MSHA biogenesis protein MshI -
  PK654_RS01465 (PK654_01465) pilO 298085..298726 (+) 642 WP_271697257.1 type 4a pilus biogenesis protein PilO -
  PK654_RS01470 (PK654_01470) - 298719..299048 (+) 330 WP_271697259.1 MSHA biogenesis protein MshK -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20045.16 Da        Isoelectric Point: 6.2367

>NTDB_id=776845 PK654_RS01450 WP_271697251.1 293902..294450(+) (ssb) [Vibrio sp. SCSIO 43137]
MASRGVNKVILMGNLGADPEVRYAANGNAIANITIATSETWRDKASGEQREKTEWHRVALFGKTAEIAGEYLRKGSQVYV
EGQLQTRKWQDQSGQDRYTTEVVVQWPTGQMQLLGGRGQGQGQGAPMGGQPQQQQQGGWGQPQQPVQQPAHQPAAPQHAA
PKPQPQQQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=776845 PK654_RS01450 WP_271697251.1 293902..294450(+) (ssb) [Vibrio sp. SCSIO 43137]
ATGGCAAGCCGTGGAGTTAACAAAGTAATTTTAATGGGCAACCTGGGCGCTGATCCTGAGGTTCGCTATGCAGCAAACGG
TAATGCAATTGCGAATATTACCATTGCAACATCAGAAACCTGGCGCGATAAAGCCAGTGGCGAGCAGAGAGAAAAAACCG
AATGGCACCGTGTTGCACTGTTTGGTAAAACTGCAGAGATTGCTGGTGAGTATCTGAGAAAAGGCTCTCAGGTATATGTA
GAAGGCCAGTTGCAGACTCGTAAATGGCAGGATCAATCCGGTCAGGATCGTTACACTACAGAAGTGGTTGTTCAATGGCC
TACCGGGCAGATGCAGTTACTGGGCGGTCGTGGTCAGGGTCAAGGTCAGGGCGCACCTATGGGCGGTCAGCCTCAGCAGC
AACAGCAAGGCGGATGGGGACAACCTCAGCAGCCAGTACAACAACCTGCTCACCAGCCAGCTGCACCTCAACATGCTGCT
CCTAAGCCGCAACCTCAGCAGCAGTACAATGAGCCGCCAATGGATTTTGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.176

100

0.742
  ssb Glaesserella parasuis strain SC1401

50

100

0.522
  ssb Neisseria meningitidis MC58

46.524

100

0.478
  ssb Neisseria gonorrhoeae MS11

45.989

100

0.473