Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   PJ259_RS11840 Genome accession   NZ_CP116340
Coordinates   2557739..2559079 (+) Length   446 a.a.
NCBI ID   WP_271652949.1    Uniprot ID   A0AAX3KRN3
Organism   Pseudomonas sp. JBR1     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2552739..2564079
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PJ259_RS11820 (PJ259_11820) - 2553043..2554068 (+) 1026 WP_271652945.1 outer membrane protein assembly factor BamD -
  PJ259_RS11825 (PJ259_11825) - 2554176..2555798 (-) 1623 WP_271652946.1 NAD+ synthase -
  PJ259_RS11830 (PJ259_11830) - 2555930..2556178 (+) 249 WP_271652947.1 PP0621 family protein -
  PJ259_RS11835 (PJ259_11835) pilS 2556162..2557736 (+) 1575 WP_271652948.1 ATP-binding protein Regulator
  PJ259_RS11840 (PJ259_11840) pilR 2557739..2559079 (+) 1341 WP_271652949.1 sigma-54 dependent transcriptional regulator Regulator
  PJ259_RS11845 (PJ259_11845) thiO 2559080..2560183 (-) 1104 WP_271652950.1 glycine oxidase ThiO -
  PJ259_RS11850 (PJ259_11850) - 2560272..2560805 (+) 534 WP_271652951.1 GspH/FimT family pseudopilin -
  PJ259_RS11855 (PJ259_11855) - 2560907..2561377 (+) 471 WP_271652952.1 GspH/FimT family pseudopilin -
  PJ259_RS11860 (PJ259_11860) pilV 2561346..2561942 (+) 597 WP_271652953.1 type IV pilus modification protein PilV -
  PJ259_RS11865 (PJ259_11865) - 2561911..2562699 (+) 789 WP_271652954.1 PilW family protein -
  PJ259_RS11870 (PJ259_11870) - 2562696..2563265 (+) 570 WP_271652955.1 PilX N-terminal domain-containing pilus assembly protein -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 48984.26 Da        Isoelectric Point: 5.8417

>NTDB_id=776683 PJ259_RS11840 WP_271652949.1 2557739..2559079(+) (pilR) [Pseudomonas sp. JBR1]
MARQKVLIVDDEPDIRELLEITLGRMKLDTASAKNITDARAILERESFDLCLTDMRLPDGSGLELINFIQQRMPQLPVAM
ITAFGSLETAVQALKAGAFDYLTKPVDLPRLRELVGTALRLSGPTPPAPGASETQLLGESPPMRALRGQIAKLARSQAPV
YISGESGSGKERVARLIHEQGPRAGRPFVPVNCGAIPSELVESEFFGHRRGSFTGAIEDKQGLFQAAQGGTLFLDEVADL
PLPMQVKLLRAIQEKAVRPVGSQQEISLDVRILSATHRDLAAEVAAGTFRQDLYYRLNVIELQVPALRERREDIGALATH
MLERLARDAGLAPATLGDDALARLKSYRFPGNVRELENMLERAYTLCEGDVIRPADLRLADAPAATATGEASLANIANLE
DHLESIERQLIMQALEETRWNRTAAAERLGLSFRSMRYRLKKLGID

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=776683 PJ259_RS11840 WP_271652949.1 2557739..2559079(+) (pilR) [Pseudomonas sp. JBR1]
ATGGCCCGACAGAAAGTCCTGATCGTCGACGATGAACCCGATATCCGCGAACTCCTGGAAATCACCCTGGGGCGGATGAA
GCTCGACACCGCCAGCGCCAAGAACATCACCGACGCGCGAGCCATTCTCGAACGGGAAAGCTTCGACCTCTGCCTGACCG
ACATGCGCCTGCCGGATGGCTCGGGCCTTGAGCTGATCAATTTCATCCAGCAGCGGATGCCGCAATTGCCGGTGGCCATG
ATCACCGCCTTCGGCAGCCTGGAAACCGCCGTTCAGGCCCTCAAGGCCGGCGCCTTCGACTACCTCACCAAGCCGGTGGA
CCTGCCGCGTCTGCGCGAGCTGGTGGGCACGGCGCTGCGCCTGTCCGGCCCTACCCCGCCAGCACCCGGTGCCAGTGAAA
CCCAGCTGCTGGGCGAATCCCCGCCCATGCGCGCCTTGCGTGGGCAGATCGCCAAGCTCGCCCGCAGTCAGGCGCCGGTC
TACATCAGTGGCGAATCGGGCAGCGGCAAGGAGCGCGTGGCACGCCTGATCCACGAGCAGGGTCCGCGCGCGGGTCGGCC
CTTCGTGCCGGTCAACTGTGGCGCCATTCCTTCCGAGTTGGTGGAAAGCGAATTCTTCGGACATCGCAGGGGCAGCTTCA
CCGGCGCCATCGAGGACAAGCAGGGCTTGTTCCAGGCCGCCCAGGGCGGCACCCTGTTTCTCGACGAGGTGGCCGATCTA
CCGCTGCCGATGCAGGTCAAGCTGTTGCGCGCCATCCAGGAAAAGGCCGTGCGCCCAGTTGGCAGCCAGCAGGAAATCAG
CCTGGACGTGCGCATTCTCAGTGCTACCCACAGGGACCTCGCCGCCGAAGTCGCCGCCGGCACCTTTCGCCAGGATCTCT
ACTACCGCCTCAACGTCATCGAGCTGCAGGTGCCTGCCCTGCGCGAACGTCGCGAGGATATCGGCGCCCTGGCCACCCAC
ATGCTCGAACGCCTGGCACGGGATGCGGGGCTCGCCCCGGCCACCCTCGGCGACGATGCCCTGGCCAGACTCAAGAGCTA
TAGATTCCCCGGCAACGTGCGCGAACTGGAAAACATGCTGGAACGGGCCTACACCCTGTGTGAAGGCGATGTCATCCGGC
CGGCCGATCTGCGCCTGGCCGATGCGCCAGCGGCCACCGCTACCGGCGAAGCCAGCCTGGCCAACATCGCCAATCTCGAA
GACCACCTGGAATCCATCGAGCGCCAGCTGATCATGCAGGCACTCGAAGAGACCCGCTGGAATCGCACCGCCGCCGCGGA
GCGCCTGGGCCTCTCCTTCCGTTCGATGCGCTACCGCCTGAAAAAGCTTGGCATCGACTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-115)

Bacterial regulatory protein, Fis family (HTH_8)

(403-443)

Sigma-54 interaction domain (Sigma54_activat)

(136-303)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

79.642

100

0.798
  pilR Acinetobacter baumannii strain A118

48.712

100

0.509
  luxO Vibrio cholerae strain A1552

37.557

99.103

0.372