Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   PJ259_RS11835 Genome accession   NZ_CP116340
Coordinates   2556162..2557736 (+) Length   524 a.a.
NCBI ID   WP_271652948.1    Uniprot ID   A0AAX3KRM0
Organism   Pseudomonas sp. JBR1     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2551162..2562736
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PJ259_RS11810 (PJ259_11810) pgeF 2551167..2551898 (-) 732 WP_271652943.1 peptidoglycan editing factor PgeF -
  PJ259_RS11815 (PJ259_11815) rluD 2551895..2552854 (-) 960 WP_271652944.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  PJ259_RS11820 (PJ259_11820) - 2553043..2554068 (+) 1026 WP_271652945.1 outer membrane protein assembly factor BamD -
  PJ259_RS11825 (PJ259_11825) - 2554176..2555798 (-) 1623 WP_271652946.1 NAD+ synthase -
  PJ259_RS11830 (PJ259_11830) - 2555930..2556178 (+) 249 WP_271652947.1 PP0621 family protein -
  PJ259_RS11835 (PJ259_11835) pilS 2556162..2557736 (+) 1575 WP_271652948.1 ATP-binding protein Regulator
  PJ259_RS11840 (PJ259_11840) pilR 2557739..2559079 (+) 1341 WP_271652949.1 sigma-54 dependent transcriptional regulator Regulator
  PJ259_RS11845 (PJ259_11845) thiO 2559080..2560183 (-) 1104 WP_271652950.1 glycine oxidase ThiO -
  PJ259_RS11850 (PJ259_11850) - 2560272..2560805 (+) 534 WP_271652951.1 GspH/FimT family pseudopilin -
  PJ259_RS11855 (PJ259_11855) - 2560907..2561377 (+) 471 WP_271652952.1 GspH/FimT family pseudopilin -
  PJ259_RS11860 (PJ259_11860) pilV 2561346..2561942 (+) 597 WP_271652953.1 type IV pilus modification protein PilV -
  PJ259_RS11865 (PJ259_11865) - 2561911..2562699 (+) 789 WP_271652954.1 PilW family protein -

Sequence

Protein


Download         Length: 524 a.a.        Molecular weight: 57480.13 Da        Isoelectric Point: 7.6180

>NTDB_id=776682 PJ259_RS11835 WP_271652948.1 2556162..2557736(+) (pilS) [Pseudomonas sp. JBR1]
MSNAADPGILRADAVLRLYHLYRIVIGLALVVLISNDLDQHWLRTVDGHLFRQASWAYLATNAVLAVGHRLLRGRAFTLA
LIDILALGGLFFLAGGIASGMGSLLVVTVGVSNVLIRGRRGLLIAALAAIALLLATGYLDLRRGDSGSGYVQAAGLGTLC
FATALLVQGLVRRLLDSQALAETRATAVAELEALNALILERMRTGILVFDAEYQVLLANPAARRLLGVDDEDTITPLTLG
LAQRLEEWERNPSIRPAPWRAYANGPLLQPSFAHLQQGEGERVLTFLEDVSRIAQQAQQLKLASLGRLTAGIAHEIRNPL
GAISHAAQLLQESEELTTPDRRLAQIIQDQSRRMNRVVENVLQLSRRRQSAPQLIDLRYWAHRFAGELRPTLPAGQTLHV
KTEPGTLQTHMDPHQLGQILTNLVQNGLRYSCQKHGIGQVWLSTYRDPESDLPILEVVDDGPGVAAEQLDHLFEPFFTTE
NKGTGLGLYISRELCESNQARLGYHPLANGSCFRITFAHPRTMS

Nucleotide


Download         Length: 1575 bp        

>NTDB_id=776682 PJ259_RS11835 WP_271652948.1 2556162..2557736(+) (pilS) [Pseudomonas sp. JBR1]
ATGAGCAACGCAGCTGATCCAGGCATCCTGAGAGCCGACGCGGTCCTGCGGCTCTACCATCTCTACCGCATCGTCATCGG
CCTGGCACTGGTGGTGCTGATCTCCAACGACCTGGATCAACACTGGCTGCGCACCGTTGATGGCCACCTGTTCCGCCAGG
CCAGCTGGGCCTATCTCGCCACCAACGCCGTGCTCGCGGTCGGCCATCGACTACTGCGCGGTCGCGCCTTCACCCTGGCG
TTGATCGATATTCTCGCCCTCGGCGGGCTGTTCTTCCTCGCTGGCGGCATCGCCAGCGGCATGGGCAGCCTGCTGGTGGT
GACCGTCGGGGTGTCCAATGTCCTGATCCGCGGTCGACGCGGCCTACTGATCGCCGCCCTGGCCGCCATCGCCCTGCTGC
TGGCGACCGGCTATCTCGACCTGCGCCGCGGCGACAGCGGCAGCGGTTACGTCCAGGCGGCTGGCCTGGGCACCCTCTGC
TTCGCCACGGCGCTGCTGGTACAGGGACTGGTCCGGCGCTTGCTGGACAGCCAGGCCCTGGCCGAAACCCGGGCCACCGC
CGTAGCCGAGCTGGAGGCCCTCAACGCCCTCATCCTCGAGCGCATGCGCACCGGCATCCTGGTCTTCGATGCCGAATACC
AGGTGCTGCTGGCCAATCCAGCAGCCCGTCGCCTGCTGGGCGTGGACGACGAAGACACCATCACGCCGCTGACCCTAGGG
CTGGCCCAGCGGCTGGAAGAATGGGAGCGCAATCCCAGCATCCGCCCCGCACCCTGGCGCGCCTATGCCAACGGCCCGCT
GCTGCAGCCCAGCTTCGCACACCTGCAGCAGGGCGAAGGCGAGCGGGTCCTGACCTTTCTCGAAGACGTCTCGCGCATCG
CCCAGCAGGCCCAGCAACTCAAGCTCGCCTCCCTTGGCCGCCTCACCGCCGGCATCGCCCACGAGATCCGCAATCCGCTG
GGCGCCATCAGTCATGCAGCGCAATTGCTGCAGGAGTCCGAAGAGCTGACCACGCCGGATCGGCGCCTGGCGCAGATCAT
CCAGGACCAGTCGCGGCGGATGAATCGCGTGGTGGAAAACGTCCTGCAGTTGTCCCGCCGCCGGCAGTCGGCGCCGCAGC
TGATCGACCTGCGCTACTGGGCACACCGCTTCGCCGGTGAGCTGCGCCCTACCCTGCCCGCCGGCCAGACCCTGCACGTC
AAGACCGAGCCCGGCACCCTGCAGACGCACATGGACCCCCACCAGCTGGGCCAGATCCTGACCAACCTGGTGCAGAACGG
CCTGCGCTACAGCTGCCAGAAGCACGGCATCGGCCAGGTCTGGCTAAGCACCTACCGCGACCCGGAAAGCGATCTCCCCA
TCCTCGAAGTGGTCGACGATGGGCCGGGGGTTGCCGCCGAACAGCTCGATCACCTGTTCGAGCCCTTCTTCACCACCGAG
AACAAGGGGACCGGACTTGGCCTGTACATCTCCCGCGAGCTTTGCGAGAGCAACCAGGCCAGACTTGGCTATCATCCCTT
GGCGAATGGCAGCTGTTTTCGCATCACCTTCGCCCATCCCCGCACAATGAGCTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(304-368)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(412-517)

PAS domain (PAS_8)

(198-233)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

59.808

99.237

0.594