Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   PJW04_RS16870 Genome accession   NZ_CP116305
Coordinates   3862149..3863207 (-) Length   352 a.a.
NCBI ID   WP_011348458.1    Uniprot ID   -
Organism   Xanthomonas perforans strain GEV872     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3857149..3868207
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PJW04_RS16850 (PJW04_16850) - 3858281..3860155 (-) 1875 WP_008575846.1 type IV pilus secretin PilQ -
  PJW04_RS16855 (PJW04_16855) - 3860175..3860708 (-) 534 WP_007974439.1 pilus assembly protein PilP -
  PJW04_RS16860 (PJW04_16860) - 3860705..3861370 (-) 666 WP_008575845.1 type 4a pilus biogenesis protein PilO -
  PJW04_RS16865 (PJW04_16865) - 3861367..3862149 (-) 783 WP_008575843.1 PilN domain-containing protein -
  PJW04_RS16870 (PJW04_16870) comM 3862149..3863207 (-) 1059 WP_011348458.1 pilus assembly protein PilM Machinery gene
  PJW04_RS16875 (PJW04_16875) - 3863325..3865847 (+) 2523 WP_074053358.1 penicillin-binding protein 1A -
  PJW04_RS16880 (PJW04_16880) - 3866158..3866808 (+) 651 WP_008575838.1 hypothetical protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37606.21 Da        Isoelectric Point: 4.3924

>NTDB_id=776539 PJW04_RS16870 WP_011348458.1 3862149..3863207(-) (comM) [Xanthomonas perforans strain GEV872]
MGLLPKSQSPLIGVDISSTAVKLLQLSRSGNRFRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAINRSGSKAKNAAAA
VAGSAVITKLIPMPADLDDSDLEAQVELEATNYIPYPIEEVNLDFEVLGPMPNSPDMVQVLLAASRSENVELRQSALELG
GLTAKVMDVEAFAVENAFALVASELPVAADAVVALVDIGATMTTLSVLRSGRSLYSREQVFGGKQLTDEVMRRYGLTYEE
AGLAKRQGGLPESYEVEVLEPFKEATVQQISRLLQFFYAGSEFNRVDCIVLAGGCAALARLPEMVEEQLGVTTVVANPLA
QMTLGPKVQAHALALDAPALMIATGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=776539 PJW04_RS16870 WP_011348458.1 3862149..3863207(-) (comM) [Xanthomonas perforans strain GEV872]
GTGGGGCTTTTACCCAAGAGTCAGTCGCCACTGATTGGTGTCGACATTAGTTCTACTGCCGTGAAGCTCTTGCAGCTATC
GCGCAGCGGGAACCGTTTTCGCGTGGAACATTACGCGGTGGAACCATTGCCGCCGAATGCGGTCGTGGAAAAGAACATCG
TCGAAGTGGAGGCGGTGGGCGAAGCCATTCGGCGCGCCATCAACCGTTCCGGCAGCAAGGCCAAGAACGCGGCCGCTGCT
GTCGCCGGGTCGGCGGTGATCACCAAGTTGATCCCGATGCCGGCCGATCTGGACGATAGCGACCTGGAAGCCCAGGTCGA
ACTGGAAGCCACCAATTACATTCCGTACCCGATCGAGGAAGTCAATCTCGATTTCGAGGTGCTGGGCCCGATGCCCAACA
GCCCGGATATGGTGCAGGTGCTGCTGGCCGCCTCGCGTTCGGAGAATGTGGAACTGCGCCAGTCGGCGCTGGAACTCGGC
GGTTTGACCGCCAAGGTCATGGACGTGGAGGCCTTCGCGGTCGAAAACGCCTTCGCGCTGGTTGCCAGCGAATTGCCGGT
GGCCGCCGATGCGGTGGTGGCGCTGGTGGATATCGGCGCCACCATGACCACGCTGAGCGTGCTGCGCTCCGGTCGCAGCC
TGTATAGCCGCGAACAGGTGTTCGGCGGCAAGCAGCTCACCGACGAAGTGATGCGCCGTTACGGGCTGACCTATGAAGAG
GCTGGCCTTGCCAAGCGTCAGGGCGGCCTGCCGGAAAGTTACGAGGTCGAGGTGCTGGAGCCGTTCAAGGAAGCCACGGT
GCAGCAGATCAGCCGTCTGCTGCAGTTCTTCTATGCGGGCAGTGAGTTCAACCGCGTCGACTGCATCGTGCTGGCCGGCG
GTTGCGCCGCGCTGGCGCGCCTGCCGGAGATGGTGGAAGAGCAGCTCGGCGTGACCACGGTCGTTGCAAATCCGCTTGCC
CAGATGACGCTTGGTCCGAAGGTTCAGGCCCATGCGCTGGCGCTGGATGCGCCTGCATTGATGATCGCCACCGGCCTGGC
CCTGAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter baylyi ADP1

51.282

99.716

0.511
  comM Acinetobacter nosocomialis M2

51.136

100

0.511
  pilM Acinetobacter baumannii D1279779

50.852

100

0.509
  pilM Legionella pneumophila strain ERS1305867

47.293

99.716

0.472