Detailed information NTG0776511

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: PJW05_RS15580
• Genome accession: NZ_CP116304
• Coordinates: 3373620..3374819 (-)
• Length: 399 a.a.
• NCBI ID: WP_271407914.1
• Uniprot ID: -
• Organism: Pseudomonas sp. Q1-7
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3368620..3379819

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PJW05_RS15560	-	3368959..3369657 (-)	699	WP_271407910.1	CoA transferase subunit A	-
PJW05_RS15565	-	3369783..3370700 (+)	918	WP_271407911.1	LysR family transcriptional regulator	-
PJW05_RS15570	-	3370736..3372691 (+)	1956	WP_271407912.1	acetoacetate--CoA ligase	-
PJW05_RS15575	-	3372793..3373389 (-)	597	WP_271407913.1	DJ-1/PfpI family protein	-
PJW05_RS15580	pilU	3373620..3374819 (-)	1200	WP_271407914.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
PJW05_RS15585	-	3374939..3375217 (+)	279	WP_271407915.1	peptidylprolyl isomerase	-
PJW05_RS15590	-	3375296..3375592 (-)	297	WP_271407916.1	hypothetical protein	-
PJW05_RS15595	-	3375677..3375868 (-)	192	WP_271407917.1	hypothetical protein	-
PJW05_RS15600	-	3376160..3376996 (+)	837	WP_271407918.1	VOC family protein	-
PJW05_RS15605	-	3377091..3377954 (+)	864	WP_271407919.1	glycine betaine ABC transporter substrate-binding protein	-
PJW05_RS15610	-	3378032..3379141 (+)	1110	WP_271407920.1	L-dopachrome tautomerase-related protein	-

Sequence

Protein

• Length: 399 a.a.
• Molecular weight: 44103.35 Da
• Isoelectric Point: 6.1319

>NTDB_id=776511 PJW05_RS15580 WP_271407914.1 3373620..3374819(-) (pilU) [Pseudomonas sp. Q1-7]
MDLSAMLKILASQDGSDLYLSTGAPPCAKFNGLLRPLSAEPLKAGDVARIAESIMDAEQRAEFDRELEMNLAISLANIGR
FRINIFRQRNEVSIVARNIKLDIPRFEDLKLPEVLLKMVMEKRGLVLFVGGTGSGKSTSLAALIDYRNRNSGGHIITIED
PVEYVHRHKKSIINQREVGVDTRSFHAALKNTLRQAPDVILIGEIRDRETMEHALAFADTGHLAISTLHANNANQALDRI
INFFPEERRPQLLNDLGNNLKAFVSQRLVRTQDGKRRAAVEVLLGTSTISDLIKRGEFHSIKEIMEKSRGLGMQTFDQAL
FDLVVEGAIPEDEAIKNADSANNLRLKLKLYRDGPAAAPAQPAPTPAAAPTRTEDAANWGLELKLEDLDDGEPEEPGPR

Nucleotide

• Length: 1200 bp

>NTDB_id=776511 PJW05_RS15580 WP_271407914.1 3373620..3374819(-) (pilU) [Pseudomonas sp. Q1-7]
ATGGACCTCTCCGCCATGCTGAAAATCCTGGCCAGCCAGGATGGTTCCGACCTCTACCTGTCCACGGGCGCGCCGCCTTG
CGCCAAGTTCAACGGCCTGCTCCGGCCGCTGTCCGCCGAGCCGTTGAAGGCCGGCGACGTGGCGAGGATCGCCGAGTCGA
TCATGGACGCCGAGCAACGCGCCGAATTCGACCGCGAGCTGGAAATGAACCTGGCCATCTCGCTGGCCAATATCGGCCGC
TTCCGCATCAACATCTTCCGCCAGCGCAACGAGGTGTCCATCGTCGCGCGCAACATCAAGCTGGACATCCCGCGCTTCGA
AGACCTCAAGCTGCCCGAAGTGTTGCTCAAGATGGTCATGGAAAAGCGTGGCCTGGTGCTCTTCGTCGGCGGCACCGGCT
CGGGCAAGTCCACCTCCCTGGCGGCGCTGATCGACTACCGCAACCGCAACAGCGGCGGGCACATCATCACCATCGAAGAC
CCGGTGGAGTACGTGCACCGGCACAAGAAATCCATCATCAACCAGCGCGAAGTGGGGGTGGACACCCGCAGTTTCCACGC
CGCGCTGAAGAACACCTTGCGCCAGGCGCCGGACGTGATCCTGATCGGCGAGATCCGCGACCGCGAAACCATGGAGCACG
CCCTGGCCTTCGCCGACACCGGCCACCTGGCGATTTCCACCCTGCATGCCAACAACGCCAACCAGGCGCTGGACCGCATC
ATCAATTTCTTCCCCGAGGAACGCCGGCCGCAACTGCTCAACGACCTGGGCAACAACCTCAAGGCCTTCGTCTCCCAACG
CCTGGTGCGTACCCAGGACGGCAAGCGCCGCGCGGCGGTGGAGGTGCTGCTGGGCACCTCTACCATCAGCGACCTGATCA
AGCGCGGCGAATTCCACTCCATCAAGGAGATCATGGAAAAGTCCCGTGGCCTGGGCATGCAGACCTTCGACCAGGCCCTG
TTCGACCTGGTGGTGGAGGGCGCCATTCCCGAGGACGAAGCGATCAAGAACGCCGATTCGGCGAACAACCTGCGCTTGAA
GCTCAAGCTCTACCGCGATGGCCCGGCCGCCGCTCCGGCCCAGCCGGCGCCCACACCGGCTGCCGCCCCGACGCGCACCG
AGGATGCCGCCAACTGGGGGCTGGAGCTGAAGCTGGAAGACCTGGATGACGGCGAACCCGAGGAGCCGGGGCCGCGGTAA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (110-271)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Pseudomonas stutzeri DSM 10701	56.695	87.97	0.499
pilU	Acinetobacter baylyi ADP1	53.693	88.221	0.474
pilU	Vibrio cholerae strain A1552	52.975	88.471	0.469
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	39.535	96.992	0.383