Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PJW05_RS03945 Genome accession   NZ_CP116304
Coordinates   866193..866678 (+) Length   161 a.a.
NCBI ID   WP_271410442.1    Uniprot ID   -
Organism   Pseudomonas sp. Q1-7     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 861193..871678
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PJW05_RS03935 uvrA 861746..864580 (-) 2835 WP_271410440.1 excinuclease ABC subunit UvrA -
  PJW05_RS03940 - 864789..866183 (+) 1395 WP_271410441.1 MFS transporter -
  PJW05_RS03945 ssb 866193..866678 (+) 486 WP_271410442.1 single-stranded DNA-binding protein Machinery gene
  PJW05_RS03950 - 866739..867617 (-) 879 WP_271410443.1 aldose 1-epimerase -
  PJW05_RS03955 - 867740..868492 (+) 753 WP_271410444.1 FadR/GntR family transcriptional regulator -
  PJW05_RS03960 - 868519..869442 (-) 924 WP_271410445.1 DMT family transporter -
  PJW05_RS03965 - 869534..870814 (-) 1281 WP_271410446.1 TRAP transporter large permease -
  PJW05_RS03970 - 870815..871342 (-) 528 WP_271410447.1 TRAP transporter small permease -

Sequence

Protein


Download         Length: 161 a.a.        Molecular weight: 17917.89 Da        Isoelectric Point: 5.3193

>NTDB_id=776499 PJW05_RS03945 WP_271410442.1 866193..866678(+) (ssb) [Pseudomonas sp. Q1-7]
MARGVNKVILVGNVGGDPETRYLPNGNAVTNITLATSESWKDKQTGQQQERTEWHRVVFFGRLAEIAGEYLRKGSQVYVE
GSLRTREWEKDGVKRYTTEIVVDINGQMQLLGGRPGSEGDAPRAPRPQREPQQAAPQQRPAPQPAAQPAPDYDSFDDDIP
F

Nucleotide


Download         Length: 486 bp        

>NTDB_id=776499 PJW05_RS03945 WP_271410442.1 866193..866678(+) (ssb) [Pseudomonas sp. Q1-7]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTTGGTAACGTCGGTGGTGATCCGGAAACCCGCTACCTGCCCAACGGCAA
TGCGGTGACCAACATCACCCTGGCCACCAGCGAGTCCTGGAAGGACAAGCAGACCGGCCAGCAGCAGGAGCGCACCGAAT
GGCACCGCGTGGTGTTCTTCGGCCGCCTCGCCGAGATCGCCGGTGAGTACCTGCGCAAGGGCTCGCAAGTCTACGTCGAA
GGTTCCCTGCGCACCCGCGAGTGGGAAAAGGACGGCGTGAAGCGCTACACCACCGAGATCGTGGTGGACATCAACGGCCA
GATGCAACTGCTCGGCGGCCGTCCCGGCAGCGAAGGCGACGCCCCGCGCGCGCCGCGCCCGCAGCGCGAGCCGCAGCAGG
CCGCCCCGCAGCAGCGTCCGGCTCCGCAACCGGCCGCCCAGCCCGCTCCGGACTACGACAGCTTCGACGACGACATCCCG
TTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

55.307

100

0.615
  ssb Glaesserella parasuis strain SC1401

48.619

100

0.547
  ssb Neisseria meningitidis MC58

45.251

100

0.503
  ssb Neisseria gonorrhoeae MS11

44.693

100

0.497