Detailed information NTG0776322

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PI990_RS05925
• Genome accession: NZ_CP116239
• Coordinates: 1252415..1253284 (-)
• Length: 289 a.a.
• NCBI ID: WP_271660080.1
• Uniprot ID: -
• Organism: Pseudomonas sp. TUM22785
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1247415..1258284

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PI990_RS05885 (PI990_05885)	-	1248708..1248881 (-)	174	WP_021221826.1	DUF3094 family protein	-
PI990_RS05890 (PI990_05890)	-	1248968..1249594 (-)	627	WP_021221827.1	DUF1780 domain-containing protein	-
PI990_RS05895 (PI990_05895)	-	1249708..1250133 (+)	426	WP_271660076.1	GNAT family N-acetyltransferase	-
PI990_RS05900 (PI990_05900)	-	1250130..1250597 (+)	468	WP_271660077.1	FAD/FMN-containing dehydrogenase	-
PI990_RS05905 (PI990_05905)	-	1250594..1251280 (+)	687	WP_271660078.1	energy-coupling factor ABC transporter permease	-
PI990_RS05910 (PI990_05910)	-	1251388..1251603 (+)	216	WP_043244210.1	hypothetical protein	-
PI990_RS05915 (PI990_05915)	yacG	1251607..1251807 (-)	201	WP_021221832.1	DNA gyrase inhibitor YacG	-
PI990_RS05920 (PI990_05920)	coaE	1251804..1252415 (-)	612	WP_271660079.1	dephospho-CoA kinase	-
PI990_RS05925 (PI990_05925)	pilD	1252415..1253284 (-)	870	WP_271660080.1	A24 family peptidase	Machinery gene
PI990_RS05930 (PI990_05930)	pilC	1253288..1254505 (-)	1218	WP_271660081.1	type II secretion system F family protein	Machinery gene
PI990_RS05935 (PI990_05935)	pilB	1254509..1256212 (-)	1704	WP_271660082.1	type IV-A pilus assembly ATPase PilB	Machinery gene
PI990_RS05940 (PI990_05940)	-	1256437..1256934 (+)	498	WP_271660083.1	pilin	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 31819.80 Da
• Isoelectric Point: 6.6208

>NTDB_id=776322 PI990_RS05925 WP_271660080.1 1252415..1253284(-) (pilD) [Pseudomonas sp. TUM22785]
MSLVEFMAGNLPAFVFCIFLLGLLVGSFLNVVIYRLPVMMFRDWKVQAREALELPAEPKGDTFNLILPNSRCPHCQHEIQ
AWENIPVVSWLALGGKCSSCKAPIKKRYPLVELACGLLSAYVAWHFGFTWQAGAFLVLTWGLLAMSMIDVDHQLLPDSLV
LPLLWLGLILNNQGMFATPSDALWGAVAGYLSLWSVYWVFKLVTGKEGMGYGDFKLLAMLGAWGGWQVLPLTILLSSLVG
AVLGIIILKLRDADSGTPIPFGPYLAIAGWIALLWGDQITGTYLHFAGF

Nucleotide

• Length: 870 bp

>NTDB_id=776322 PI990_RS05925 WP_271660080.1 1252415..1253284(-) (pilD) [Pseudomonas sp. TUM22785]
ATGTCCCTCGTTGAATTTATGGCCGGCAATTTGCCGGCCTTTGTTTTCTGCATCTTCCTCCTCGGCCTTCTCGTCGGCAG
CTTCCTTAACGTCGTCATCTACCGCCTGCCGGTGATGATGTTCCGTGACTGGAAGGTGCAGGCGCGGGAGGCGTTGGAGC
TGCCGGCGGAGCCCAAGGGCGATACCTTCAACCTGATCCTGCCGAACTCGCGCTGCCCACATTGCCAGCATGAGATCCAG
GCCTGGGAGAACATTCCCGTGGTCAGTTGGCTGGCCTTGGGTGGCAAGTGCTCGTCGTGCAAGGCACCGATCAAGAAGCG
CTACCCGCTGGTGGAACTGGCGTGTGGCCTGCTGTCGGCTTATGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCTGGGG
CGTTCCTGGTGCTGACCTGGGGGCTACTGGCGATGAGCATGATCGACGTCGACCACCAGCTGCTGCCGGATTCCCTGGTA
CTGCCGCTGCTGTGGCTTGGCCTGATCCTCAACAACCAGGGAATGTTCGCCACGCCCAGCGATGCGCTCTGGGGCGCGGT
TGCGGGTTATCTCAGCCTGTGGTCGGTGTATTGGGTGTTCAAGCTGGTGACCGGCAAGGAAGGCATGGGCTACGGCGACT
TCAAGTTGCTGGCGATGCTCGGTGCCTGGGGCGGCTGGCAGGTGTTGCCGCTGACCATCCTGCTGTCGTCCCTGGTGGGC
GCGGTGCTGGGGATCATCATTCTCAAGCTGCGCGATGCCGACAGCGGCACGCCCATCCCCTTCGGCCCTTACCTGGCGAT
TGCCGGCTGGATTGCATTGCTCTGGGGTGATCAAATAACCGGGACCTATCTCCACTTCGCCGGTTTCTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (136-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	52.281	98.616	0.516
pilD	Vibrio cholerae strain A1552	56.015	92.042	0.516
pilD	Acinetobacter nosocomialis M2	51.579	98.616	0.509
pilD	Vibrio campbellii strain DS40M4	52.747	94.464	0.498
pilD	Neisseria gonorrhoeae MS11	52.107	90.311	0.471