Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   PI990_RS05730 Genome accession   NZ_CP116239
Coordinates   1215933..1217267 (-) Length   444 a.a.
NCBI ID   WP_184488604.1    Uniprot ID   -
Organism   Pseudomonas sp. TUM22785     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1210933..1222267
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PI990_RS05695 (PI990_05695) - 1211301..1211648 (-) 348 WP_271660055.1 hypothetical protein -
  PI990_RS05700 (PI990_05700) - 1211655..1212176 (-) 522 WP_271660056.1 PilX N-terminal domain-containing pilus assembly protein -
  PI990_RS05705 (PI990_05705) - 1212184..1212966 (-) 783 WP_271660057.1 PilW family protein -
  PI990_RS05710 (PI990_05710) pilV 1212963..1213541 (-) 579 WP_271660058.1 type IV pilus modification protein PilV -
  PI990_RS05715 (PI990_05715) - 1213557..1214075 (-) 519 WP_271660059.1 GspH/FimT family pseudopilin -
  PI990_RS05720 (PI990_05720) - 1214200..1214742 (-) 543 WP_271660060.1 GspH/FimT family protein -
  PI990_RS05725 (PI990_05725) thiO 1214814..1215920 (+) 1107 WP_271660061.1 glycine oxidase ThiO -
  PI990_RS05730 (PI990_05730) pilR 1215933..1217267 (-) 1335 WP_184488604.1 sigma-54 dependent transcriptional regulator Regulator
  PI990_RS05735 (PI990_05735) pilS 1217270..1218862 (-) 1593 WP_021219359.1 ATP-binding protein Regulator
  PI990_RS05740 (PI990_05740) - 1218852..1219088 (-) 237 WP_021219358.1 PP0621 family protein -
  PI990_RS05745 (PI990_05745) - 1219271..1220290 (-) 1020 WP_021219357.1 outer membrane protein assembly factor BamD -
  PI990_RS05750 (PI990_05750) rluD 1220451..1221410 (+) 960 WP_271661265.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  PI990_RS05755 (PI990_05755) pgeF 1221410..1222135 (+) 726 WP_271660062.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 444 a.a.        Molecular weight: 49600.80 Da        Isoelectric Point: 5.4294

>NTDB_id=776319 PI990_RS05730 WP_184488604.1 1215933..1217267(-) (pilR) [Pseudomonas sp. TUM22785]
MTRQKALIVDDEPDIRELLEITLGRMKLDTRSARNVKEARELLAAEPFDLCLTDMRLPDGTGLDLVQHIQQRHPQVPVAM
ITAYGSLDTAVNALKAGAFDFLTKPVDLGRLRELVAAALRLRTSSNGETPMDNRLLGDSPPMKSLRNQIQKLARSQAPVY
ISGESGSGKELVARMIHEQGPRHEDPFVPVNCGAIPSELMESEFFGHKKGSFTGAIEDKIGLFQAAHGGTLFLDEVADLP
LPMQVKLLRAIQEKAVRTIGGQQEVVVDVRILSATHKDLAAEVAAGRFRQDLYYRLNVIELSVPPLRERREDIPQLADVM
LKRLAADSSAAASITRDAMEKLKSYRFPGNVRELENMLERAYTLCENDQIQPEDLRLTDAPAASENGEADLAQIDNLEDY
LEEVERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGID

Nucleotide


Download         Length: 1335 bp        

>NTDB_id=776319 PI990_RS05730 WP_184488604.1 1215933..1217267(-) (pilR) [Pseudomonas sp. TUM22785]
ATGACCAGACAGAAAGCACTCATCGTCGATGACGAGCCCGATATCCGCGAACTGCTGGAGATCACCCTCGGCCGGATGAA
GCTGGACACCCGCAGCGCCCGCAATGTGAAAGAGGCCCGCGAGCTCCTGGCCGCCGAACCCTTCGACCTGTGCCTCACCG
ACATGCGCCTGCCCGACGGCACCGGCCTCGACCTCGTTCAGCACATCCAGCAACGCCACCCTCAGGTGCCCGTTGCCATG
ATCACCGCGTACGGCAGCCTGGATACGGCCGTCAACGCCCTGAAGGCCGGCGCCTTTGACTTCCTCACCAAGCCGGTGGA
CCTCGGCCGGCTCCGCGAACTGGTAGCCGCCGCCTTGCGCCTGCGCACCAGCAGCAACGGCGAAACGCCGATGGACAACC
GCCTGCTCGGCGACTCCCCGCCGATGAAGTCACTGCGCAACCAGATCCAGAAGCTCGCCCGCAGCCAGGCCCCTGTGTAC
ATCAGCGGCGAATCCGGCAGCGGCAAGGAGCTGGTGGCCCGCATGATCCACGAGCAGGGCCCGCGCCATGAAGACCCCTT
CGTGCCGGTCAACTGCGGCGCCATCCCGTCGGAGCTGATGGAAAGCGAGTTCTTCGGCCACAAGAAAGGCAGCTTCACCG
GCGCCATCGAAGACAAGATCGGCCTGTTCCAGGCTGCCCACGGTGGCACCCTGTTCCTCGATGAAGTGGCCGACCTGCCC
CTGCCCATGCAGGTGAAACTGCTGCGCGCCATCCAGGAAAAAGCCGTCCGCACCATCGGCGGACAGCAGGAAGTGGTAGT
GGACGTGCGCATCCTCAGCGCCACCCACAAGGACCTGGCCGCAGAAGTGGCTGCAGGACGCTTCCGCCAGGACCTCTATT
ACCGCCTGAACGTCATCGAACTCAGCGTCCCTCCGCTGCGCGAGCGCCGCGAGGACATCCCGCAACTGGCCGACGTCATG
CTCAAGCGCCTGGCAGCGGACAGCAGCGCTGCGGCCAGCATCACCCGCGATGCGATGGAGAAGCTCAAGAGCTACCGCTT
CCCCGGCAACGTCCGCGAGCTGGAAAACATGCTGGAGCGGGCCTACACGCTGTGTGAGAACGACCAGATCCAGCCTGAAG
ACCTGCGCCTGACGGATGCACCGGCGGCTTCCGAAAACGGCGAAGCCGACCTCGCGCAGATCGACAATCTCGAGGACTAC
CTGGAAGAGGTGGAGCGCAAGCTGATCATGCAGGCGCTCGAGGAAACCCGCTGGAACCGCACCGCCGCAGCCCAACGCCT
GGGCCTGACCTTCCGCTCGATGCGCTACCGCCTGAAGAAACTGGGGATCGACTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(136-301)

Response regulator receiver domain (Response_reg)

(7-115)

Bacterial regulatory protein, Fis family (HTH_8)

(401-441)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

86.966

100

0.872
  pilR Acinetobacter baumannii strain A118

49.455

100

0.511
  luxO Vibrio cholerae strain A1552

37.162

100

0.372