Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   PI990_RS05735 Genome accession   NZ_CP116239
Coordinates   1217270..1218862 (-) Length   530 a.a.
NCBI ID   WP_021219359.1    Uniprot ID   A0AAU7Y5U8
Organism   Pseudomonas sp. TUM22785     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1212270..1223862
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PI990_RS05710 (PI990_05710) pilV 1212963..1213541 (-) 579 WP_271660058.1 type IV pilus modification protein PilV -
  PI990_RS05715 (PI990_05715) - 1213557..1214075 (-) 519 WP_271660059.1 GspH/FimT family pseudopilin -
  PI990_RS05720 (PI990_05720) - 1214200..1214742 (-) 543 WP_271660060.1 GspH/FimT family protein -
  PI990_RS05725 (PI990_05725) thiO 1214814..1215920 (+) 1107 WP_271660061.1 glycine oxidase ThiO -
  PI990_RS05730 (PI990_05730) pilR 1215933..1217267 (-) 1335 WP_184488604.1 sigma-54 dependent transcriptional regulator Regulator
  PI990_RS05735 (PI990_05735) pilS 1217270..1218862 (-) 1593 WP_021219359.1 ATP-binding protein Regulator
  PI990_RS05740 (PI990_05740) - 1218852..1219088 (-) 237 WP_021219358.1 PP0621 family protein -
  PI990_RS05745 (PI990_05745) - 1219271..1220290 (-) 1020 WP_021219357.1 outer membrane protein assembly factor BamD -
  PI990_RS05750 (PI990_05750) rluD 1220451..1221410 (+) 960 WP_271661265.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  PI990_RS05755 (PI990_05755) pgeF 1221410..1222135 (+) 726 WP_271660062.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 58629.90 Da        Isoelectric Point: 8.5806

>NTDB_id=776320 PI990_RS05735 WP_021219359.1 1217270..1218862(-) (pilS) [Pseudomonas sp. TUM22785]
MSAEAPALGSQPARRIFRLYNIYRLLIGLALVGLISSELDSELLDLARAQLFRNACWFYLLLNILIALMVRHPKHMLQVF
SLALVDVILLSCLFYAAGGTPSGIGNLVIVAVAIANILLRGRVGLLIAAVAAIGMIYLTFYLSLSRPEAASQYVQAGALG
ALCFAAALFVQGISKRLQLSETLAEKRAADVANLEALNALILQRMRTGILVLDPQHRVILANQGALTLLGREDLAGKVLD
PQSPELVKRLQQWLDNPTLRPQSLQAVAEGPVLQPSFVSLQRGEQRDTLIFLDDISQIAQQAQQLKLASLGRLTAGIAHE
IRNPLGAISHAAQLLQESEELSGPDQRLAQIIQDQSRRMNLVIENVLQLSRRRQAEPQLLDLKYWLHRFASEFRNASGPG
QTLHIETNSGTIQTRMDPHQLTQVLTNLVQNGLRYSSQKNKVGQVWLKLFRDPESDLPVLEVMDDGAGVPAEQVQHIFEP
FYTTENKGTGLGLYISRELCESNQARLDYRPRETGGSCFRITFAHPRKLS

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=776320 PI990_RS05735 WP_021219359.1 1217270..1218862(-) (pilS) [Pseudomonas sp. TUM22785]
GTGAGCGCTGAAGCCCCCGCGCTGGGCAGCCAGCCGGCACGCCGCATCTTCCGCCTCTACAACATCTACCGCCTGCTCAT
CGGCCTGGCACTGGTAGGCCTGATCTCCAGCGAGCTGGACAGCGAACTGCTCGACCTGGCCCGCGCCCAGCTGTTCCGCA
ATGCGTGCTGGTTCTACCTGCTGCTGAACATCCTCATCGCGCTGATGGTCCGCCACCCGAAACACATGCTGCAGGTCTTC
AGCCTGGCGCTGGTGGACGTGATCCTGCTGTCCTGCCTATTCTATGCGGCGGGCGGCACGCCGAGCGGTATCGGCAACCT
GGTGATAGTTGCGGTGGCGATCGCCAACATCCTGCTGCGCGGCCGGGTCGGCTTGCTGATCGCCGCCGTTGCCGCCATCG
GCATGATCTACCTGACCTTCTACCTCAGCCTCAGCCGCCCGGAAGCCGCCAGCCAGTACGTGCAGGCCGGCGCCCTGGGT
GCCTTGTGCTTCGCCGCCGCCCTCTTCGTCCAGGGCATCAGCAAGCGCCTGCAACTGAGCGAGACCCTGGCCGAAAAACG
TGCCGCCGACGTCGCCAACCTGGAAGCGCTCAACGCCCTGATCCTTCAGCGCATGCGCACCGGCATCCTGGTGCTCGACC
CCCAGCACCGCGTAATCCTGGCCAACCAGGGTGCACTGACGCTGCTGGGCCGCGAGGACCTGGCCGGCAAGGTCCTCGAC
CCGCAAAGCCCGGAGCTGGTGAAACGCCTGCAGCAGTGGCTGGACAACCCCACGCTGCGTCCCCAGAGCCTGCAGGCGGT
GGCCGAAGGCCCGGTGCTGCAACCGAGCTTCGTCTCCCTGCAGCGGGGCGAGCAGCGGGACACCCTGATCTTCCTCGACG
ACATCTCGCAGATCGCCCAACAGGCCCAGCAACTCAAGCTCGCCTCCCTGGGTCGTCTGACCGCCGGCATCGCCCACGAG
ATACGCAACCCACTGGGCGCCATCAGCCACGCGGCGCAGTTGCTGCAGGAGTCCGAGGAGCTGTCCGGTCCCGACCAGCG
CCTGGCGCAGATCATCCAGGACCAGTCTCGGCGTATGAACCTGGTGATCGAGAACGTCCTGCAGCTCTCCCGCCGCCGCC
AAGCGGAGCCGCAATTGCTCGACCTGAAGTACTGGCTGCACCGCTTCGCCAGCGAATTCCGCAACGCATCCGGCCCGGGC
CAGACGCTGCACATCGAGACCAACAGCGGCACCATCCAGACCCGCATGGACCCGCACCAACTCACCCAGGTACTGACCAA
CCTGGTACAGAACGGCCTGCGCTACAGTTCACAGAAGAACAAGGTAGGACAGGTCTGGCTGAAGCTGTTCCGCGACCCGG
AAAGCGACCTGCCCGTTCTGGAAGTGATGGATGACGGCGCCGGCGTACCCGCCGAGCAGGTGCAGCACATCTTCGAGCCC
TTCTACACCACCGAAAACAAGGGCACCGGGCTTGGCCTGTACATCTCACGGGAGCTGTGCGAGAGCAACCAGGCCCGTCT
CGACTACAGGCCCCGCGAAACCGGAGGCAGCTGCTTTCGCATAACCTTTGCCCACCCGCGCAAATTGAGCTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)

PAS domain (PAS_8)

(202-253)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

65.849

100

0.658