Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PG663_RS16215 Genome accession   NZ_CP116223
Coordinates   3499268..3499792 (+) Length   174 a.a.
NCBI ID   WP_004249162.1    Uniprot ID   A0A1Z1SRL1
Organism   Proteus mirabilis strain PM1-chromosome     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3494268..3504792
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PG663_RS16210 (PG663_16210) uvrA 3496181..3499015 (-) 2835 WP_004249165.1 excinuclease ABC subunit UvrA -
  PG663_RS16215 (PG663_16215) ssb 3499268..3499792 (+) 525 WP_004249162.1 single-stranded DNA-binding protein SSB1 Machinery gene
  PG663_RS16220 (PG663_16220) - 3500158..3500934 (+) 777 WP_046334366.1 winged helix-turn-helix domain-containing protein -
  PG663_RS16225 (PG663_16225) - 3500924..3501406 (+) 483 WP_046334365.1 FidL-like protein -
  PG663_RS16230 (PG663_16230) - 3501806..3502357 (+) 552 WP_046334364.1 fimbrial protein -
  PG663_RS16235 (PG663_16235) - 3502402..3502968 (+) 567 WP_230629661.1 fimbrial protein -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18830.90 Da        Isoelectric Point: 4.9468

>NTDB_id=776241 PG663_RS16215 WP_004249162.1 3499268..3499792(+) (ssb) [Proteus mirabilis strain PM1-chromosome]
MASRGVNKVILIGNLGQDPEIRYMPSGGAVANLTLATSESWRDKQTGEMKEKTEWHRVVIFGKLAEIAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVNIGGTMQMLGGRGGQDNAPSQGQGGWGQPQQPQASQQFSGGAPSRPAQQPAAAPAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=776241 PG663_RS16215 WP_004249162.1 3499268..3499792(+) (ssb) [Proteus mirabilis strain PM1-chromosome]
ATGGCGAGCAGAGGCGTTAACAAAGTTATTCTTATCGGTAATTTAGGGCAGGATCCAGAAATCCGTTATATGCCAAGTGG
TGGTGCAGTGGCAAATCTGACACTAGCAACTTCAGAAAGCTGGCGCGACAAACAAACCGGTGAAATGAAAGAGAAAACCG
AATGGCACCGTGTGGTCATTTTCGGCAAACTAGCAGAAATTGCTGGCGAGTATCTGCGTAAAGGTTCACAAGTTTATATT
GAAGGTCAATTACAAACACGTAAATGGCAAGATCAAAGTGGTCAAGATCGCTACAGCACTGAAGTTGTGGTGAATATCGG
TGGCACAATGCAGATGTTAGGTGGCCGTGGTGGTCAAGATAATGCACCTTCACAAGGCCAAGGCGGTTGGGGTCAACCTC
AGCAACCACAAGCATCACAACAGTTTAGTGGTGGCGCACCATCTCGCCCAGCACAACAACCCGCAGCGGCACCAGCGCCA
AGTAATGAACCACCAATGGACTTTGATGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Z1SRL1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

71.892

100

0.764
  ssb Glaesserella parasuis strain SC1401

57.065

100

0.603
  ssb Neisseria meningitidis MC58

48.023

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.023

100

0.489