Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   PGS39_RS27975 Genome accession   NZ_CP116204
Coordinates   5346275..5346796 (-) Length   173 a.a.
NCBI ID   WP_048548345.1    Uniprot ID   -
Organism   Bacillus paranthracis strain NVH_0075/95     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5341275..5351796
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PGS39_RS27955 (PGS39_27955) rplI 5342485..5342931 (-) 447 WP_000864231.1 50S ribosomal protein L9 -
  PGS39_RS27960 (PGS39_27960) - 5342928..5344901 (-) 1974 WP_001113897.1 DHH family phosphoesterase -
  PGS39_RS27965 (PGS39_27965) - 5344980..5345915 (-) 936 WP_048548357.1 YybS family protein -
  PGS39_RS27970 (PGS39_27970) rpsR 5345996..5346229 (-) 234 WP_000918873.1 30S ribosomal protein S18 -
  PGS39_RS27975 (PGS39_27975) ssbA 5346275..5346796 (-) 522 WP_048548345.1 single-stranded DNA-binding protein Machinery gene
  PGS39_RS27980 (PGS39_27980) rpsF 5346823..5347113 (-) 291 WP_001233779.1 30S ribosomal protein S6 -
  PGS39_RS27985 (PGS39_27985) ychF 5347305..5348405 (-) 1101 WP_000524669.1 redox-regulated ATPase YchF -
  PGS39_RS27990 (PGS39_27990) - 5348521..5348718 (-) 198 WP_000436051.1 DUF951 domain-containing protein -
  PGS39_RS27995 (PGS39_27995) - 5348739..5349620 (-) 882 WP_000365104.1 mechanosensitive ion channel family protein -
  PGS39_RS28000 (PGS39_28000) yyaC 5349879..5350475 (+) 597 WP_001020720.1 spore protease YyaC -
  PGS39_RS28005 (PGS39_28005) spo0J 5350496..5351347 (-) 852 WP_001051837.1 stage 0 sporulation protein Spo0J -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18793.58 Da        Isoelectric Point: 4.9327

>NTDB_id=776172 PGS39_RS27975 WP_048548345.1 5346275..5346796(-) (ssbA) [Bacillus paranthracis strain NVH_0075/95]
MMNRVILVGRLTKDPDLRYTPNGVAVATFTLAVNRAFANQQGEREADFINCVIWRKQAENVANYLKKGSLAGVDGRLQTR
NYEGQDGKRVYVTEVLAEGVQFLEPRNGGGEQRGSFNQQPSGAGFGNQSSNPFGQSSNSGNQGNQGNSGFTKNDDPFSNV
GQPIDISDDDLPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=776172 PGS39_RS27975 WP_048548345.1 5346275..5346796(-) (ssbA) [Bacillus paranthracis strain NVH_0075/95]
TTGATGAATCGTGTTATCCTCGTTGGTCGTTTAACTAAGGACCCTGACTTACGTTACACGCCCAATGGTGTTGCAGTAGC
TACTTTTACGTTAGCTGTGAATCGCGCATTTGCGAATCAACAAGGTGAGCGTGAAGCTGACTTTATTAATTGTGTAATAT
GGCGTAAACAAGCAGAAAACGTAGCAAATTATTTGAAAAAAGGTAGCTTAGCAGGCGTAGATGGGCGTCTTCAAACTCGT
AATTACGAGGGACAAGATGGTAAACGTGTATATGTAACAGAAGTTCTTGCGGAAGGCGTACAATTTTTAGAGCCGCGTAA
TGGCGGTGGGGAGCAACGTGGTTCATTTAATCAGCAACCATCAGGAGCTGGTTTCGGTAACCAAAGCTCTAACCCATTTG
GTCAATCTAGTAATTCAGGCAACCAAGGTAACCAAGGAAACTCTGGATTTACGAAGAATGACGATCCATTTTCAAATGTA
GGTCAACCGATCGACATTTCCGACGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

71.751

100

0.734
  ssb Latilactobacillus sakei subsp. sakei 23K

58.286

100

0.59
  ssbB Bacillus subtilis subsp. subtilis str. 168

65.094

61.272

0.399
  ssb Glaesserella parasuis strain SC1401

35.165

100

0.37