Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PIC71_RS21005 Genome accession   NZ_CP116152
Coordinates   4235030..4235566 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain DETEC-P61     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4230030..4240566
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PIC71_RS20970 (PIC71_20970) soxR 4230981..4231445 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  PIC71_RS20975 (PIC71_20975) soxS 4231531..4231854 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  PIC71_RS20980 (PIC71_20980) - 4231857..4232189 (-) 333 WP_000952090.1 EAL domain-containing protein -
  PIC71_RS20985 (PIC71_20985) - 4232202..4233194 (-) 993 WP_239804073.1 EAL domain-containing protein -
  PIC71_RS20995 (PIC71_20995) - 4233948..4234220 (-) 273 Protein_4109 CSS-motif domain-containing protein -
  PIC71_RS21000 (PIC71_21000) yjcB 4234650..4234931 (+) 282 WP_001295689.1 YjcB family protein -
  PIC71_RS21005 (PIC71_21005) ssb 4235030..4235566 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  PIC71_RS21010 (PIC71_21010) uvrA 4235820..4238642 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA -
  PIC71_RS21015 (PIC71_21015) yjbR 4238677..4239033 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  PIC71_RS21020 (PIC71_21020) yjbQ 4239037..4239453 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  PIC71_RS21025 (PIC71_21025) aphA 4239564..4240277 (-) 714 WP_001395166.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=775917 PIC71_RS21005 WP_000168305.1 4235030..4235566(-) (ssb) [Escherichia coli strain DETEC-P61]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=775917 PIC71_RS21005 WP_000168305.1 4235030..4235566(-) (ssb) [Escherichia coli strain DETEC-P61]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489