Detailed information NTG0077580

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: MWM06_RS02270
• Genome accession: NZ_AP025596
• Coordinates: 404783..405757 (-)
• Length: 324 a.a.
• NCBI ID: WP_024119065.1
• Uniprot ID: -
• Organism: Thermus thermophilus strain SNM1-1
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 399783..410757

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MWM06_RS02250 (TthSNM11_04400)	-	400039..400467 (+)	429	WP_011172492.1	hypothetical protein	-
MWM06_RS02255 (TthSNM11_04410)	ftsH	400453..402309 (-)	1857	WP_244361186.1	ATP-dependent zinc metalloprotease FtsH	-
MWM06_RS02260 (TthSNM11_04420)	-	402382..403734 (+)	1353	WP_008631640.1	tetratricopeptide repeat protein	-
MWM06_RS02265 (TthSNM11_04430)	-	403755..404786 (-)	1032	WP_011172495.1	DUF4388 domain-containing protein	-
MWM06_RS02270 (TthSNM11_04440)	ruvB	404783..405757 (-)	975	WP_024119065.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
MWM06_RS02275 (TthSNM11_04450)	panB	405783..406571 (+)	789	WP_244361188.1	3-methyl-2-oxobutanoate hydroxymethyltransferase	-
MWM06_RS02280 (TthSNM11_04460)	-	406619..407545 (+)	927	WP_011227915.1	RluA family pseudouridine synthase	-
MWM06_RS02285 (TthSNM11_04470)	-	407542..408435 (+)	894	WP_244361190.1	site-specific DNA-methyltransferase	-
MWM06_RS02290 (TthSNM11_04490)	lysN	409074..410267 (-)	1194	WP_244361192.1	2-aminoadipate transaminase	-

Sequence

Protein

• Length: 324 a.a.
• Molecular weight: 35959.72 Da
• Isoelectric Point: 6.3227

>NTDB_id=77580 MWM06_RS02270 WP_024119065.1 404783..405757(-) (ruvB) [Thermus thermophilus strain SNM1-1]
MDDLALRPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPGDL
AAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFG
IVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVITRERALEALAALGL
DELGLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEVHEPYLIRQGLLKRTPRGRVATELAYRHLGYPPPVGP
LLEP

Nucleotide

• Length: 975 bp

>NTDB_id=77580 MWM06_RS02270 WP_024119065.1 404783..405757(-) (ruvB) [Thermus thermophilus strain SNM1-1]
GTGGACGACCTCGCCCTTAGGCCCAAGACCCTGGACGAGTACATCGGCCAGGAGCGCCTGAAGCAAAAGCTCCGGGTCTA
CCTCGAGGCGGCCAAGGCCCGAAAAGAGCCCTTGGAGCACCTCCTCCTCTTCGGCCCCCCGGGCCTGGGCAAGACCACCC
TGGCCCACGTCATCGCCCACGAGCTTGGGGTCAACCTCCGGGTCACCTCCGGGCCCGCCATAGAGAAGCCCGGGGACCTC
GCCGCCATCCTGGCCAACTCCCTGGAGGAAGGGGACATCCTCTTCATTGACGAGATCCACCGCCTGAGCCGCCAGGCCGA
GGAGCACCTCTACCCCGCCATGGAGGACTTCGTCATGGACATCGTCATCGGCCAGGGTCCGGCGGCGAGGACGATCCGGC
TGGAGCTTCCCCGCTTCACCCTGATCGGGGCCACCACCCGGCCCGGCCTCATCACCGCGCCCCTCTTGAGCCGCTTCGGC
ATCGTGGAGCACCTGGAGTACTACACCCCCGAGGAGCTGGCCCAAGGGGTGATGCGGGACGCCCGCCTCCTCGGGGTGAG
GATCACGGAGGAGGCCGCCCTGGAGATCGGTAGGCGGAGCCGGGGCACCATGCGCGTCGCCAAGCGCCTCTTCCGGAGGG
TGCGGGACTTCGCCCAGGTGGCGGGGGAGGAGGTCATCACCCGGGAGCGGGCCTTGGAGGCCCTTGCCGCCCTGGGCCTG
GACGAGCTGGGCTTGGAGAAGCGGGACCGGGAGATCCTGGAGGTCCTCATCCTCCGCTTCGGCGGCGGCCCCGTGGGCCT
CGCCACCTTGGCCACCGCCCTCTCCGAGGACCCGGGCACCTTGGAAGAGGTGCACGAGCCCTACCTCATCCGCCAGGGCC
TTTTGAAGCGCACCCCCCGGGGCCGGGTGGCCACGGAACTGGCCTACCGCCACCTGGGCTACCCGCCCCCGGTGGGCCCC
CTCTTGGAGCCGTGA

Domains

Predicted by InterProScan.

• RuvB AAA lid domain (AAA_lid_4) (168-241)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (6-165)

• RuvB C-terminal winged helix domain (WHD_RuvB) (242-312)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Bacillus subtilis subsp. subtilis str. 168	59.105	96.605	0.571
ruvB	Streptococcus pneumoniae TIGR4	56.774	95.679	0.543
ruvB	Streptococcus pneumoniae R6	56.774	95.679	0.543
ruvB	Streptococcus pneumoniae D39	56.774	95.679	0.543
ruvB	Synechocystis sp. PCC 6803	51.258	98.148	0.503
ruvB	Helicobacter pylori 26695	50.799	96.605	0.491