Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PID00_RS18885 Genome accession   NZ_CP116067
Coordinates   3801240..3801776 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain DETEC-S792     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3796240..3806776
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PID00_RS18865 (PID00_18865) aphA 3796529..3797242 (+) 714 WP_001226928.1 acid phosphatase AphA -
  PID00_RS18870 (PID00_18870) yjbQ 3797353..3797769 (+) 417 WP_000270369.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  PID00_RS18875 (PID00_18875) yjbR 3797773..3798129 (+) 357 WP_096122442.1 MmcQ/YjbR family DNA-binding protein -
  PID00_RS18880 (PID00_18880) uvrA 3798164..3800986 (-) 2823 WP_000357740.1 excinuclease ABC subunit UvrA -
  PID00_RS18885 (PID00_18885) ssb 3801240..3801776 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  PID00_RS18890 (PID00_18890) yjcB 3801875..3802156 (-) 282 WP_001295689.1 YjcB family protein -
  PID00_RS18895 (PID00_18895) pdeC 3802586..3804172 (+) 1587 WP_001562444.1 c-di-GMP phosphodiesterase PdeC -
  PID00_RS18900 (PID00_18900) soxS 3804175..3804498 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  PID00_RS18905 (PID00_18905) soxR 3804584..3805048 (+) 465 WP_000412424.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=775608 PID00_RS18885 WP_000168305.1 3801240..3801776(+) (ssb) [Escherichia coli strain DETEC-S792]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=775608 PID00_RS18885 WP_000168305.1 3801240..3801776(+) (ssb) [Escherichia coli strain DETEC-S792]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCCACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489