Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   QVN08_RS10005 Genome accession   NZ_CP128888
Coordinates   2076322..2077332 (+) Length   336 a.a.
NCBI ID   WP_000568519.1    Uniprot ID   Q32HA1
Organism   Escherichia coli strain TUM14697     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2071322..2082332
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QVN08_RS09975 (QVN08_09975) nudB 2073046..2073498 (+) 453 WP_077249130.1 dihydroneopterin triphosphate diphosphatase -
  QVN08_RS09980 (QVN08_09980) yebC 2073527..2074267 (+) 741 WP_000907234.1 YebC/PmpR family DNA-binding transcriptional regulator -
  QVN08_RS09985 (QVN08_09985) ruvC 2074302..2074823 (+) 522 WP_001295503.1 crossover junction endodeoxyribonuclease RuvC -
  QVN08_RS09990 (QVN08_09990) yebB 2074825..2075427 (-) 603 WP_001024919.1 YebB family permuted papain-like enzyme -
  QVN08_RS09995 (QVN08_09995) yobI 2075498..2075563 (+) 66 WP_072093883.1 stress response small protein YobI -
  QVN08_RS10000 (QVN08_10000) ruvA 2075702..2076313 (+) 612 WP_000580323.1 Holliday junction branch migration protein RuvA -
  QVN08_RS10005 (QVN08_10005) ruvB 2076322..2077332 (+) 1011 WP_000568519.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  QVN08_RS10010 (QVN08_10010) znuB 2077479..2078264 (-) 786 WP_000571478.1 zinc ABC transporter permease subunit ZnuB -
  QVN08_RS10015 (QVN08_10015) znuC 2078261..2079016 (-) 756 WP_000202996.1 zinc ABC transporter ATP-binding protein ZnuC -
  QVN08_RS10020 (QVN08_10020) znuA 2079095..2080027 (+) 933 WP_001347089.1 zinc ABC transporter substrate-binding protein ZnuA -
  QVN08_RS10025 (QVN08_10025) mepM 2080043..2081365 (+) 1323 WP_001184045.1 murein DD-endopeptidase MepM -

Sequence

Protein


Download         Length: 336 a.a.        Molecular weight: 37173.77 Da        Isoelectric Point: 4.7818

>NTDB_id=775599 QVN08_RS10005 WP_000568519.1 2076322..2077332(+) (ruvB) [Escherichia coli strain TUM14697]
MIEADRLISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG
VNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGA
TTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDG
TISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMA
TTRAWNHFGITPPEMP

Nucleotide


Download         Length: 1011 bp        

>NTDB_id=775599 QVN08_RS10005 WP_000568519.1 2076322..2077332(+) (ruvB) [Escherichia coli strain TUM14697]
ATGATTGAAGCAGACCGTCTGATTTCTGCCGGTACCACTTTGCCGGAAGATGTGGCAGATCGCGCCATTCGCCCTAAATT
ACTGGAAGAGTATGTTGGTCAGCCGCAGGTTCGTTCGCAGATGGAGATTTTCATCAAAGCAGCGAAACTGCGCGGCGATG
CCCTCGATCATCTATTGATTTTTGGTCCTCCGGGGTTGGGTAAAACTACGCTTGCCAATATTGTCGCCAATGAAATGGGC
GTTAATTTACGCACGACTTCTGGTCCGGTGCTGGAAAAGGCGGGCGATCTGGCAGCAATGCTCACTAACCTTGAACCACA
CGATGTACTGTTTATTGATGAGATCCACCGTCTTTCACCAGTGGTGGAAGAGGTGTTGTATCCGGCAATGGAAGATTACC
AACTGGATATCATGATTGGTGAAGGTCCGGCGGCACGCTCCATTAAAATTGATTTGCCGCCGTTTACCCTGATTGGTGCA
ACCACGCGCGCAGGTTCGCTGACATCACCGTTGCGCGATCGTTTTGGTATTGTGCAACGTCTGGAGTTTTATCAGGTGCC
GGATCTGCAATATATCGTCAGTCGCAGCGCACGCTTTATGGGGCTTGAGATGAGTGATGACGGCGCGCTGGAAGTTGCTC
GTCGTGCGCGCGGTACGCCACGTATTGCCAACCGTCTGCTGCGTCGAGTGCGTGATTTCGCCGAAGTGAAGCACGATGGC
ACCATCTCGGCAGATATCGCTGCTCAGGCGCTGGATATGTTGAATGTCGATGCTGAAGGTTTCGATTATATGGACCGCAA
ATTGTTGCTGGCGGTAATCGATAAGTTCTTTGGCGGGCCGGTAGGTCTGGATAACCTGGCGGCAGCCATTGGCGAAGAAC
GTGAAACCATTGAGGATGTACTGGAACCTTATTTGATTCAGCAAGGCTTTTTGCAGCGTACACCGCGTGGGCGTATGGCG
ACGACGCGGGCGTGGAATCACTTTGGCATAACGCCGCCAGAAATGCCGTAA

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(23-181)

RuvB AAA lid domain (AAA_lid_4)

(184-257)

RuvB C-terminal winged helix domain (WHD_RuvB)

(259-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HA1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

60.486

97.917

0.592
  ruvB Streptococcus pneumoniae TIGR4

58.934

94.94

0.56
  ruvB Streptococcus pneumoniae R6

58.934

94.94

0.56
  ruvB Streptococcus pneumoniae D39

58.934

94.94

0.56
  ruvB Synechocystis sp. PCC 6803

53.251

96.131

0.512
  ruvB Helicobacter pylori 26695

52.038

94.94

0.494