Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   H7R81_RS02440 Genome accession   NZ_AP022290
Coordinates   502149..502736 (-) Length   195 a.a.
NCBI ID   WP_005340181.1    Uniprot ID   A0A165S798
Organism   Aeromonas veronii strain WP9-W18-ESBL-04     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 497149..507736
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7R81_RS02425 (WP9W18E04_04610) - 497210..499087 (-) 1878 WP_034524358.1 integrase -
  H7R81_RS02430 (WP9W18E04_04620) - 499097..500665 (-) 1569 WP_174218922.1 site-specific integrase -
  H7R81_RS02435 (WP9W18E04_04630) - 500658..501983 (-) 1326 WP_043147737.1 site-specific integrase -
  H7R81_RS02440 (WP9W18E04_04640) ssb 502149..502736 (-) 588 WP_005340181.1 single-stranded DNA-binding protein Machinery gene
  H7R81_RS02445 (WP9W18E04_04650) uvrA 503110..505938 (+) 2829 WP_182938343.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21583.11 Da        Isoelectric Point: 5.9301

>NTDB_id=77550 H7R81_RS02440 WP_005340181.1 502149..502736(-) (ssb) [Aeromonas veronii strain WP9-W18-ESBL-04]
MASRGINKVILIGNLGQDPEVRYMPSGGAVTNITLATSETWRDKQTGEQKERTEWHRVVFMGKLAEVAGEYLKKGSQVYV
EGKLQTRKWQDQSGQERYTTEVLVDSFTGVMQMLGGRPQGGQGMGQNMGGQSQGNWGQPQQSMPAQQPMNQQRPAPAPQQ
NMQPQGGYGRPAQQPQSAPPVYNEPPMDFDDDIPF

Nucleotide


Download         Length: 588 bp        

>NTDB_id=77550 H7R81_RS02440 WP_005340181.1 502149..502736(-) (ssb) [Aeromonas veronii strain WP9-W18-ESBL-04]
ATGGCCAGTCGAGGCATCAATAAAGTCATTCTGATCGGTAACCTCGGGCAAGACCCGGAAGTACGCTACATGCCGAGTGG
CGGTGCTGTGACCAACATTACTCTGGCTACCTCTGAAACCTGGCGCGACAAACAGACCGGTGAGCAGAAAGAGCGTACCG
AATGGCATCGCGTTGTCTTCATGGGCAAGTTGGCCGAAGTGGCTGGCGAGTACCTGAAGAAGGGCTCCCAGGTCTATGTC
GAAGGCAAACTGCAAACCCGCAAATGGCAAGATCAGAGCGGCCAGGAGCGTTACACCACTGAAGTGCTGGTCGACAGCTT
CACTGGCGTGATGCAGATGCTGGGTGGCCGTCCACAAGGCGGTCAGGGTATGGGCCAGAACATGGGTGGCCAATCCCAGG
GTAACTGGGGTCAGCCGCAGCAGAGTATGCCTGCCCAGCAGCCGATGAACCAGCAGCGCCCGGCGCCGGCTCCGCAGCAA
AACATGCAGCCGCAAGGCGGTTATGGCCGTCCGGCCCAGCAGCCACAATCTGCGCCGCCGGTATATAACGAACCACCGAT
GGATTTCGACGACGATATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A165S798

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

69.347

100

0.708
  ssb Glaesserella parasuis strain SC1401

53.886

98.974

0.533
  ssb Neisseria meningitidis MC58

46.597

97.949

0.456
  ssb Neisseria gonorrhoeae MS11

46.842

97.436

0.456

Multiple sequence alignment