Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PGW89_RS08970 Genome accession   NZ_CP116040
Coordinates   1918188..1918769 (+) Length   193 a.a.
NCBI ID   WP_113996553.1    Uniprot ID   -
Organism   Acinetobacter haemolyticus strain HW-2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1913188..1923769
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PGW89_RS08945 (PGW89_08945) - 1913577..1914149 (+) 573 WP_113996550.1 DUF2939 domain-containing protein -
  PGW89_RS08950 (PGW89_08950) - 1914205..1914558 (+) 354 WP_004641483.1 DUF1304 domain-containing protein -
  PGW89_RS08955 (PGW89_08955) tenA 1914710..1915384 (-) 675 WP_113996551.1 thiaminase II -
  PGW89_RS08960 (PGW89_08960) - 1915557..1916639 (+) 1083 WP_113996552.1 DUF475 domain-containing protein -
  PGW89_RS08965 (PGW89_08965) - 1916772..1918136 (+) 1365 WP_004641478.1 MFS transporter -
  PGW89_RS08970 (PGW89_08970) ssb 1918188..1918769 (+) 582 WP_113996553.1 single-stranded DNA-binding protein Machinery gene
  PGW89_RS08975 (PGW89_08975) - 1919170..1920603 (+) 1434 WP_005087114.1 amino acid permease -
  PGW89_RS08980 (PGW89_08980) - 1920660..1922162 (-) 1503 WP_113996554.1 PLP-dependent aminotransferase family protein -
  PGW89_RS08985 (PGW89_08985) gabT 1922317..1923609 (+) 1293 WP_113996555.1 4-aminobutyrate--2-oxoglutarate transaminase -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21184.87 Da        Isoelectric Point: 6.7311

>NTDB_id=775497 PGW89_RS08970 WP_113996553.1 1918188..1918769(+) (ssb) [Acinetobacter haemolyticus strain HW-2]
MRGVNKVILVGTLGKDPETKTFPNGGSLTQFSIATSESWTDKNTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYSTEIRGDQMQMLDSRQQSEQSGGDFNQPRFNNNQGGGYQNTGHSNNQNGYGQGGGFNGGNQGNY
AGNPQAGNGFNTPKSAPQPAATAPADLDDDLPF

Nucleotide


Download         Length: 582 bp        

>NTDB_id=775497 PGW89_RS08970 WP_113996553.1 1918188..1918769(+) (ssb) [Acinetobacter haemolyticus strain HW-2]
ATGCGTGGTGTGAATAAAGTTATTTTAGTCGGTACTTTGGGTAAAGATCCAGAAACAAAGACTTTTCCGAATGGTGGCTC
GCTAACACAGTTCTCGATTGCAACAAGTGAATCGTGGACAGATAAAAATACAGGCGAACGTAAAGAGCAAACAGAGTGGC
ATCGTATTGTATTGCATAACCGTTTAGGTGAAATTGCACAGCAATATCTTCGCAAAGGTTCTAAAGTCTATATCGAAGGT
TCACTACGTACCCGTCAATGGACTGACCAAAATGGTCAAGAGCGCTACAGCACTGAAATTCGCGGTGATCAAATGCAAAT
GCTTGATTCACGTCAGCAAAGTGAACAAAGCGGTGGTGATTTCAATCAACCACGTTTTAACAATAATCAAGGCGGTGGTT
ACCAAAACACAGGTCATAGCAACAATCAAAATGGTTATGGTCAAGGTGGTGGTTTTAATGGTGGTAATCAAGGCAATTAT
GCAGGCAATCCACAAGCGGGTAATGGTTTTAATACACCAAAGTCTGCACCACAACCTGCTGCGACAGCACCTGCTGATTT
AGATGATGATTTGCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

53

100

0.549
  ssb Vibrio cholerae strain A1552

44.335

100

0.466
  ssb Neisseria gonorrhoeae MS11

38.421

98.446

0.378
  ssb Neisseria meningitidis MC58

38.421

98.446

0.378