Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   PGW89_RS07270 Genome accession   NZ_CP116040
Coordinates   1558598..1559728 (+) Length   376 a.a.
NCBI ID   WP_113997859.1    Uniprot ID   -
Organism   Acinetobacter haemolyticus strain HW-2     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 1553598..1564728
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PGW89_RS07250 (PGW89_07250) - 1554151..1556247 (-) 2097 WP_113997857.1 TonB-dependent copper receptor -
  PGW89_RS07255 (PGW89_07255) - 1556321..1556758 (-) 438 WP_113997858.1 DUF2946 family protein -
  PGW89_RS07260 (PGW89_07260) def 1556779..1557309 (-) 531 WP_004637502.1 peptide deformylase -
  PGW89_RS07265 (PGW89_07265) tsaP 1557435..1558586 (+) 1152 WP_005092484.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  PGW89_RS07270 (PGW89_07270) dprA 1558598..1559728 (+) 1131 WP_113997859.1 DNA-processing protein DprA Machinery gene
  PGW89_RS07275 (PGW89_07275) - 1559766..1560335 (+) 570 WP_113997860.1 Sua5/YciO/YrdC/YwlC family protein -
  PGW89_RS07280 (PGW89_07280) - 1560711..1561631 (-) 921 WP_005085672.1 DMT family transporter -
  PGW89_RS07285 (PGW89_07285) - 1561734..1562381 (-) 648 WP_017396658.1 TetR/AcrR family transcriptional regulator -
  PGW89_RS07290 (PGW89_07290) - 1562528..1563751 (+) 1224 WP_113997861.1 MFS transporter -
  PGW89_RS07295 (PGW89_07295) - 1563763..1564536 (+) 774 WP_113997862.1 AraC family transcriptional regulator -

Sequence


Protein


Download         Length: 376 a.a.        Molecular weight: 41912.65 Da        Isoelectric Point: 6.7270

>NTDB_id=775494 PGW89_RS07270 WP_113997859.1 1558598..1559728(+) (dprA) [Acinetobacter haemolyticus strain HW-2]
MLNQLLPHHYSTVLVWYLVQHSLSSFQKIVDYFGNCEQATQTERFPEWQQLGLHANHLKRLAEFQTPEGQQQFAQLVKLI
CQHSDFILTPEDIGYPTQLLPYSDHPPILFGQGNPHALLQPQIAMVGSRKPSPHGRQVAYDFAYYLSEKGFYISSGLAHG
IDHAAHQGGLVHQRTIAVVGTGLDRVYPTQHVQLAQQIAQSGAIISEFLPSTMPLQQHFPRRNRIVSGLSLGVVVVEAAI
KSGSLITANQAASQGKMVFAIPGHIYSEHHQGCHQLIREGAILVDHPEQVIEDLALPTQWQSEQQSSEKSSNAAPSLPSH
LVGLYQCLDWVGQDIDQLTQLQQSNIAELTSHLMELELLGLCTQRGGRYLRCRPML

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=775494 PGW89_RS07270 WP_113997859.1 1558598..1559728(+) (dprA) [Acinetobacter haemolyticus strain HW-2]
ATGTTGAACCAATTATTACCTCACCATTACTCTACCGTGCTGGTGTGGTATTTGGTTCAACATTCACTTTCTAGCTTTCA
AAAAATTGTCGACTATTTTGGCAATTGCGAACAAGCAACCCAAACTGAGCGCTTCCCTGAATGGCAACAACTGGGCTTAC
ATGCCAATCATTTAAAACGTTTAGCTGAATTTCAAACACCTGAAGGGCAACAACAATTTGCTCAGTTAGTAAAATTAATC
TGTCAACATAGTGATTTTATTTTAACACCCGAAGATATTGGTTATCCGACACAACTACTCCCTTACTCAGACCATCCACC
GATACTTTTTGGACAAGGGAATCCACACGCTTTATTACAACCACAAATCGCGATGGTAGGAAGCCGCAAACCGAGTCCTC
ATGGGCGCCAAGTCGCTTATGATTTTGCGTATTATTTAAGTGAAAAAGGTTTTTATATTAGTAGTGGTCTAGCACATGGT
ATTGATCATGCTGCACATCAAGGTGGATTGGTTCATCAACGTACCATTGCTGTTGTTGGAACAGGATTAGACCGTGTCTA
TCCAACTCAACATGTACAACTAGCCCAGCAAATTGCACAGTCGGGTGCTATCATCTCCGAGTTCCTTCCCTCCACTATGC
CTTTACAACAACATTTCCCTCGTCGTAATCGGATTGTCAGTGGCTTAAGTCTTGGTGTTGTTGTGGTTGAAGCTGCAATA
AAAAGTGGTTCTCTTATTACTGCCAATCAGGCGGCTAGCCAAGGAAAAATGGTGTTTGCGATTCCTGGGCATATTTATAG
TGAACACCATCAAGGCTGTCACCAACTCATTCGAGAAGGTGCAATCTTAGTCGATCATCCTGAGCAAGTAATCGAGGACT
TAGCCTTACCTACTCAATGGCAATCTGAACAGCAATCTTCAGAAAAATCCTCAAATGCGGCTCCAAGCCTTCCCTCACAC
TTGGTTGGTCTGTATCAATGTTTAGACTGGGTTGGACAAGACATAGACCAACTCACACAACTACAGCAAAGCAATATTGC
TGAGCTTACTTCACACCTCATGGAACTTGAGCTATTAGGTTTATGTACACAACGAGGCGGACGCTATTTACGTTGTCGCC
CAATGCTTTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii strain A118

72.267

99.734

0.721

  dprA Acinetobacter baumannii D1279779

72.267

99.734

0.721

  dprA Acinetobacter baylyi ADP1

67.454

100

0.684