Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   PGW89_RS07265 Genome accession   NZ_CP116040
Coordinates   1557435..1558586 (+) Length   383 a.a.
NCBI ID   WP_005092484.1    Uniprot ID   A0A372MNT8
Organism   Acinetobacter haemolyticus strain HW-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1552435..1563586
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PGW89_RS07245 (PGW89_07245) - 1553341..1554105 (+) 765 WP_213068188.1 hypothetical protein -
  PGW89_RS07250 (PGW89_07250) - 1554151..1556247 (-) 2097 WP_113997857.1 TonB-dependent copper receptor -
  PGW89_RS07255 (PGW89_07255) - 1556321..1556758 (-) 438 WP_113997858.1 DUF2946 family protein -
  PGW89_RS07260 (PGW89_07260) def 1556779..1557309 (-) 531 WP_004637502.1 peptide deformylase -
  PGW89_RS07265 (PGW89_07265) tsaP 1557435..1558586 (+) 1152 WP_005092484.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  PGW89_RS07270 (PGW89_07270) dprA 1558598..1559728 (+) 1131 WP_113997859.1 DNA-processing protein DprA Machinery gene
  PGW89_RS07275 (PGW89_07275) - 1559766..1560335 (+) 570 WP_113997860.1 Sua5/YciO/YrdC/YwlC family protein -
  PGW89_RS07280 (PGW89_07280) - 1560711..1561631 (-) 921 WP_005085672.1 DMT family transporter -
  PGW89_RS07285 (PGW89_07285) - 1561734..1562381 (-) 648 WP_017396658.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 383 a.a.        Molecular weight: 41721.84 Da        Isoelectric Point: 9.4255

>NTDB_id=775493 PGW89_RS07265 WP_005092484.1 1557435..1558586(+) (tsaP) [Acinetobacter haemolyticus strain HW-2]
MKKVLNGIQSFHALGLKKQLIAAAICAGLGMSVNLAHAASPNVSPPSVKVGAPHVYVVKKGDTLWDISGKFLSKPWRWPE
IWASNKHVKNPHWIYPGDRLLLCSLNGKPLVGKDEGDGCAGIIRRYTGNTSTLRPQVRVEALNNSIPVIPLAHIQQWLER
TSVLPADAIAHTPYILGTADQRVLAGKGQRVYVRGNGIENGQRYGVFREGEPYTILDEHGKKQVLGVELTQVASGVAIST
EKDITTVELTDSYNGEVRRGDRVMPEQDAMLPTLFYPTDANQVTDGGKIIRVMGSIGTAAKNGVVTVDRGTADGIEIGQV
FNAYQDGETVKDPKTKENVKLPGQYVGSVMIFKSFDRISYAYVLESELPIKMGSSIKPPRLDN

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=775493 PGW89_RS07265 WP_005092484.1 1557435..1558586(+) (tsaP) [Acinetobacter haemolyticus strain HW-2]
ATGAAAAAGGTTTTAAACGGCATACAATCATTTCATGCCTTGGGGTTAAAAAAACAACTGATTGCCGCTGCAATATGTGC
AGGACTAGGCATGAGTGTCAATCTTGCACATGCTGCAAGTCCGAACGTTAGTCCACCCTCAGTAAAAGTGGGTGCACCAC
ACGTTTATGTGGTCAAAAAAGGCGATACGCTTTGGGACATTTCAGGTAAGTTTTTAAGCAAGCCTTGGCGTTGGCCTGAG
ATTTGGGCAAGCAATAAGCACGTTAAAAACCCGCACTGGATCTATCCAGGCGACCGCTTATTGCTTTGTAGTTTGAATGG
CAAACCATTGGTGGGTAAAGATGAGGGAGATGGCTGTGCGGGTATTATTCGCCGTTATACAGGCAACACCTCAACATTAC
GCCCACAGGTGCGTGTCGAAGCACTCAACAATAGCATTCCAGTTATTCCATTGGCGCATATTCAACAATGGCTCGAGCGT
ACCTCGGTTCTTCCAGCTGATGCAATTGCGCATACACCTTATATCCTGGGTACAGCCGATCAACGTGTACTCGCTGGTAA
AGGTCAACGTGTTTATGTCCGTGGTAACGGCATTGAAAATGGTCAACGCTATGGCGTATTCCGTGAAGGTGAACCGTACA
CCATTCTTGATGAACATGGCAAAAAGCAGGTCCTTGGCGTTGAATTGACCCAAGTTGCTTCAGGTGTTGCCATTAGCACT
GAAAAGGATATTACCACTGTTGAGTTAACCGATAGTTATAACGGTGAAGTTCGTCGTGGTGATCGTGTCATGCCTGAACA
AGATGCCATGTTACCAACATTGTTCTACCCAACCGATGCAAATCAAGTCACTGATGGCGGTAAAATTATTCGTGTCATGG
GTTCAATTGGTACAGCCGCTAAAAATGGTGTTGTCACCGTCGATCGTGGTACAGCTGATGGAATCGAAATCGGACAAGTA
TTTAATGCTTATCAAGACGGTGAAACAGTAAAAGATCCGAAAACGAAAGAAAATGTCAAATTACCAGGACAGTATGTCGG
TAGTGTGATGATCTTTAAGAGCTTTGACCGTATCAGCTATGCGTATGTGCTTGAAAGTGAGTTACCAATAAAAATGGGCT
CAAGTATCAAACCACCTCGTTTAGATAACTAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(56-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A372MNT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

72.135

100

0.723