Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   QU579_RS10300 Genome accession   NZ_CP128803
Coordinates   2252066..2253070 (-) Length   334 a.a.
NCBI ID   WP_005457270.1    Uniprot ID   Q87QU7
Organism   Vibrio parahaemolyticus strain NJIFDCVp52     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2247066..2258070
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QU579_RS10270 (QU579_10510) tolQ 2247170..2247868 (-) 699 WP_005485405.1 protein TolQ -
  QU579_RS10275 (QU579_10515) ybgC 2247858..2248277 (-) 420 WP_005483618.1 tol-pal system-associated acyl-CoA thioesterase -
  QU579_RS10280 (QU579_10520) ybgE 2248450..2248752 (-) 303 WP_025589254.1 cyd operon protein YbgE -
  QU579_RS10285 (QU579_10525) cydX 2248745..2248852 (-) 108 WP_000270284.1 cytochrome bd-I oxidase subunit CydX -
  QU579_RS10290 (QU579_10530) cydB 2248865..2250001 (-) 1137 WP_005483614.1 cytochrome d ubiquinol oxidase subunit II -
  QU579_RS10295 (QU579_10535) cydA 2250019..2251605 (-) 1587 WP_342821068.1 cytochrome ubiquinol oxidase subunit I -
  QU579_RS10300 (QU579_10540) ruvB 2252066..2253070 (-) 1005 WP_005457270.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  QU579_RS10305 (QU579_10545) ruvA 2253092..2253706 (-) 615 WP_005486097.1 Holliday junction branch migration protein RuvA -
  QU579_RS10310 (QU579_10550) - 2253785..2255236 (-) 1452 WP_342821067.1 methyl-accepting chemotaxis protein -
  QU579_RS10315 (QU579_10555) ruvC 2255358..2255879 (-) 522 WP_053302449.1 crossover junction endodeoxyribonuclease RuvC -
  QU579_RS10320 (QU579_10560) aspS 2256008..2257786 (-) 1779 WP_005483110.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 37226.63 Da        Isoelectric Point: 4.7025

>NTDB_id=775359 QU579_RS10300 WP_005457270.1 2252066..2253070(-) (ruvB) [Vibrio parahaemolyticus strain NJIFDCVp52]
MIEADRLIAPENPAFRDEDVIDRAIRPKKLADYQGQDHVRDQMEIFIKAAQLRSEALDHLLIFGPPGLGKTTLANIVANE
MEVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRLSPMVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLI
GATTRAGSLTSPLRDRFGITQRLEYYKVQDLQNIVQRSADCLGLSMEPEGALEVARRARGTPRIANRLLRRVRDYAEVKG
NGHICADVADKALNMLDVDAQGFDYMDRKLLLAIMEKFGGGPVGLDNMAAAIGEEKDTIEDVLEPYLIQQGYLQRTPRGR
IATDRAYLHFGIEK

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=775359 QU579_RS10300 WP_005457270.1 2252066..2253070(-) (ruvB) [Vibrio parahaemolyticus strain NJIFDCVp52]
ATGATTGAAGCCGATCGTTTAATCGCTCCTGAAAATCCAGCGTTTCGTGATGAAGATGTTATTGACCGTGCTATTCGCCC
TAAAAAGTTGGCGGATTATCAAGGTCAGGATCATGTCCGTGATCAGATGGAGATTTTCATCAAAGCGGCACAATTGCGTA
GTGAGGCGTTAGACCACCTACTTATTTTTGGCCCTCCAGGTTTGGGTAAAACGACGTTGGCAAACATTGTTGCTAACGAG
ATGGAAGTGAACATCCGTACTACTTCTGGACCTGTTCTCGAAAAAGCAGGCGATTTGGCCGCGTTGTTGACCAACCTTGA
GGAAAACGACGTGCTTTTCATTGATGAGATCCATCGTCTTAGCCCTATGGTCGAAGAGGTGCTGTATCCGGCAATGGAAG
ATTACCAATTGGACATCATGATTGGTGAAGGCCCGGCCGCACGTTCTATCAAAATTGATTTGCCACCATTCACATTGATT
GGTGCAACGACGCGTGCGGGGTCTTTGACTTCTCCGCTGCGTGACCGTTTTGGTATTACTCAGCGTCTTGAGTACTACAA
AGTGCAAGATCTACAGAACATTGTTCAACGCAGTGCAGATTGCCTAGGGTTGTCGATGGAGCCAGAAGGCGCGTTAGAAG
TTGCTCGACGAGCTCGTGGTACGCCTCGTATTGCGAACCGTCTATTGCGCCGTGTCCGTGACTATGCAGAAGTGAAGGGC
AACGGACATATTTGTGCCGATGTTGCTGACAAAGCGCTTAATATGTTGGATGTCGATGCTCAGGGCTTCGATTACATGGA
CCGCAAGCTTCTTCTCGCTATCATGGAGAAATTTGGTGGTGGTCCAGTTGGACTCGACAATATGGCTGCCGCTATTGGTG
AAGAGAAAGACACCATTGAAGATGTGCTAGAACCATATTTGATTCAGCAAGGCTATTTACAACGCACTCCCCGAGGAAGA
ATCGCCACAGATCGTGCATATCTTCATTTCGGAATTGAAAAATAA

Domains

Predicted by InterProScan.

RuvB AAA lid domain (AAA_lid_4)

(186-259)

RuvB C-terminal winged helix domain (WHD_RuvB)

(261-330)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(25-183)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87QU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

60.486

98.503

0.596
  ruvB Streptococcus pneumoniae TIGR4

58.824

96.707

0.569
  ruvB Streptococcus pneumoniae R6

58.824

96.707

0.569
  ruvB Streptococcus pneumoniae D39

58.824

96.707

0.569
  ruvB Synechocystis sp. PCC 6803

55.987

92.515

0.518
  ruvB Helicobacter pylori 26695

54.276

91.018

0.494