Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   PGA57_RS03310 Genome accession   NZ_CP116016
Coordinates   648415..648723 (+) Length   102 a.a.
NCBI ID   WP_004270901.1    Uniprot ID   A0AAJ0LFY3
Organism   Latilactobacillus curvatus strain SRCM217410     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 643415..653723
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PGA57_RS03270 (PGA57_03270) - 643697..643936 (-) 240 WP_004270892.1 cytochrome b5 domain-containing protein -
  PGA57_RS03275 (PGA57_03275) - 644131..644466 (+) 336 WP_146954925.1 hypothetical protein -
  PGA57_RS03285 (PGA57_03285) - 644647..645024 (-) 378 WP_004270910.1 hypothetical protein -
  PGA57_RS03290 (PGA57_03290) - 645127..645627 (+) 501 WP_004270893.1 VanZ family protein -
  PGA57_RS03295 (PGA57_03295) - 645717..646448 (+) 732 WP_004270897.1 YebC/PmpR family DNA-binding transcriptional regulator -
  PGA57_RS03300 (PGA57_03300) comGA 646552..647427 (+) 876 WP_039099523.1 competence type IV pilus ATPase ComGA Machinery gene
  PGA57_RS03305 (PGA57_03305) comGB 647417..648418 (+) 1002 WP_146954924.1 type II secretion system F family protein Machinery gene
  PGA57_RS03310 (PGA57_03310) comGC 648415..648723 (+) 309 WP_004270901.1 competence type IV pilus major pilin ComGC Machinery gene
  PGA57_RS03315 (PGA57_03315) - 648788..649147 (+) 360 WP_158022155.1 hypothetical protein -
  PGA57_RS03320 (PGA57_03320) - 649134..649439 (+) 306 WP_039099485.1 hypothetical protein -
  PGA57_RS03325 (PGA57_03325) - 649387..649890 (+) 504 WP_158070645.1 competence type IV pilus minor pilin ComGF -
  PGA57_RS03330 (PGA57_03330) - 649868..650191 (+) 324 WP_221276460.1 hypothetical protein -
  PGA57_RS03335 (PGA57_03335) - 650307..651326 (+) 1020 WP_333780842.1 class I SAM-dependent methyltransferase -
  PGA57_RS03340 (PGA57_03340) - 651348..652541 (+) 1194 WP_271260130.1 acetate/propionate family kinase -
  PGA57_RS03345 (PGA57_03345) - 652601..653053 (+) 453 WP_271260131.1 laaL -

Sequence

Protein


Download         Length: 102 a.a.        Molecular weight: 11238.13 Da        Isoelectric Point: 9.6264

>NTDB_id=775313 PGA57_RS03310 WP_004270901.1 648415..648723(+) (comGC) [Latilactobacillus curvatus strain SRCM217410]
MKKKRNAFTLIEMVVVLAVIAMLVLLIAPNLMHQKETAEQKTDTALVATIQTQVELAEDDGKTVSSLADLASGEKYLTNN
QVKQAEKRGITIKDNKVVQNTK

Nucleotide


Download         Length: 309 bp        

>NTDB_id=775313 PGA57_RS03310 WP_004270901.1 648415..648723(+) (comGC) [Latilactobacillus curvatus strain SRCM217410]
ATGAAGAAGAAAAGAAATGCATTTACATTGATCGAAATGGTCGTTGTGCTAGCTGTGATAGCAATGTTAGTCTTGTTAAT
TGCACCTAATTTAATGCATCAGAAAGAGACAGCTGAGCAAAAAACGGATACGGCTCTAGTGGCAACGATTCAAACACAAG
TTGAATTAGCTGAGGATGACGGTAAAACGGTGTCGAGTCTAGCCGATTTAGCATCAGGTGAAAAATATTTAACCAATAAT
CAGGTTAAACAAGCTGAAAAACGCGGCATAACAATTAAGGATAATAAAGTTGTTCAAAATACAAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Latilactobacillus sakei subsp. sakei 23K

60

98.039

0.588