Detailed information
Bioinformatically predicted
Overview
| Name | comGB | Type | Machinery gene |
| Locus tag | PGA57_RS03305 | Genome accession | NZ_CP116016 |
| Coordinates | 647417..648418 (+) | Length | 333 a.a. |
| NCBI ID | WP_146954924.1 | Uniprot ID | - |
| Organism | Latilactobacillus curvatus strain SRCM217410 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 642417..653418
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PGA57_RS03265 (PGA57_03265) | - | 642593..643606 (+) | 1014 | WP_004265264.1 | YeiH family protein | - |
| PGA57_RS03270 (PGA57_03270) | - | 643697..643936 (-) | 240 | WP_004270892.1 | cytochrome b5 domain-containing protein | - |
| PGA57_RS03275 (PGA57_03275) | - | 644131..644466 (+) | 336 | WP_146954925.1 | hypothetical protein | - |
| PGA57_RS03285 (PGA57_03285) | - | 644647..645024 (-) | 378 | WP_004270910.1 | hypothetical protein | - |
| PGA57_RS03290 (PGA57_03290) | - | 645127..645627 (+) | 501 | WP_004270893.1 | VanZ family protein | - |
| PGA57_RS03295 (PGA57_03295) | - | 645717..646448 (+) | 732 | WP_004270897.1 | YebC/PmpR family DNA-binding transcriptional regulator | - |
| PGA57_RS03300 (PGA57_03300) | comGA | 646552..647427 (+) | 876 | WP_039099523.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| PGA57_RS03305 (PGA57_03305) | comGB | 647417..648418 (+) | 1002 | WP_146954924.1 | type II secretion system F family protein | Machinery gene |
| PGA57_RS03310 (PGA57_03310) | comGC | 648415..648723 (+) | 309 | WP_004270901.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| PGA57_RS03315 (PGA57_03315) | - | 648788..649147 (+) | 360 | WP_158022155.1 | hypothetical protein | - |
| PGA57_RS03320 (PGA57_03320) | - | 649134..649439 (+) | 306 | WP_039099485.1 | hypothetical protein | - |
| PGA57_RS03325 (PGA57_03325) | - | 649387..649890 (+) | 504 | WP_158070645.1 | competence type IV pilus minor pilin ComGF | - |
| PGA57_RS03330 (PGA57_03330) | - | 649868..650191 (+) | 324 | WP_221276460.1 | hypothetical protein | - |
| PGA57_RS03335 (PGA57_03335) | - | 650307..651326 (+) | 1020 | WP_333780842.1 | class I SAM-dependent methyltransferase | - |
| PGA57_RS03340 (PGA57_03340) | - | 651348..652541 (+) | 1194 | WP_271260130.1 | acetate/propionate family kinase | - |
| PGA57_RS03345 (PGA57_03345) | - | 652601..653053 (+) | 453 | WP_271260131.1 | laaL | - |
Sequence
Protein
Download Length: 333 a.a. Molecular weight: 37887.13 Da Isoelectric Point: 9.6278
>NTDB_id=775312 PGA57_RS03305 WP_146954924.1 647417..648418(+) (comGB) [Latilactobacillus curvatus strain SRCM217410]
MKTKITVQFNTEFMLLLGRLLQNGFSLQQALEFMPIVFPTQKQWLHQVQTGLEAGKRLAPSLAAVSFPTHLVAQIELTEL
QGNLGECLLHLGQLQRIQQKRRRELVGVIAYPCFLLLFLGALIGMMQIYLFPEIAQFNPTTSATSPLQLFFRVMGTFVIM
AGGLISVYLFRWHRRPLLQRLAAAFRWPFIGKTLQAYYQYCLLFDLATCLNNGLNLAEMHQLTHRLAKTSWLVQLMQQLE
TAVQKGGTLLANLADGVFYPPELQLVLAKGSPLQQMAKEVDLLAVIKYDELQRQLKQKVNWLQPLLFILIGIIIICTYLS
ILLPLYHTMEGIS
MKTKITVQFNTEFMLLLGRLLQNGFSLQQALEFMPIVFPTQKQWLHQVQTGLEAGKRLAPSLAAVSFPTHLVAQIELTEL
QGNLGECLLHLGQLQRIQQKRRRELVGVIAYPCFLLLFLGALIGMMQIYLFPEIAQFNPTTSATSPLQLFFRVMGTFVIM
AGGLISVYLFRWHRRPLLQRLAAAFRWPFIGKTLQAYYQYCLLFDLATCLNNGLNLAEMHQLTHRLAKTSWLVQLMQQLE
TAVQKGGTLLANLADGVFYPPELQLVLAKGSPLQQMAKEVDLLAVIKYDELQRQLKQKVNWLQPLLFILIGIIIICTYLS
ILLPLYHTMEGIS
Nucleotide
Download Length: 1002 bp
>NTDB_id=775312 PGA57_RS03305 WP_146954924.1 647417..648418(+) (comGB) [Latilactobacillus curvatus strain SRCM217410]
ATGAAGACTAAAATCACTGTTCAATTCAATACTGAATTTATGTTGCTGTTAGGGCGCTTACTGCAAAATGGTTTTTCTTT
ACAACAAGCACTTGAGTTCATGCCGATTGTTTTTCCGACACAAAAGCAGTGGCTGCATCAGGTGCAAACTGGGTTAGAAG
CAGGAAAACGACTAGCACCAAGCTTAGCGGCGGTTTCGTTTCCAACACACCTTGTTGCACAGATTGAATTGACTGAGTTG
CAGGGAAACTTAGGCGAGTGTTTGTTACATCTTGGCCAATTACAGCGAATTCAACAGAAACGGCGTAGAGAGTTAGTTGG
CGTAATTGCCTATCCCTGTTTTCTACTCCTTTTTCTCGGGGCGTTGATTGGGATGATGCAGATTTATCTTTTTCCGGAAA
TCGCGCAGTTTAACCCAACAACTTCGGCGACATCACCATTACAACTATTTTTTAGAGTGATGGGGACATTCGTTATTATG
GCTGGTGGTCTGATTAGTGTGTATTTATTCCGTTGGCATCGGCGACCGCTATTACAACGATTGGCGGCGGCATTTAGATG
GCCGTTCATCGGTAAAACGTTGCAGGCTTACTATCAGTATTGCTTATTATTTGATTTAGCGACTTGCCTGAATAACGGCT
TAAACTTGGCCGAAATGCATCAGCTTACACATCGTTTGGCGAAAACATCGTGGCTTGTACAATTAATGCAACAACTTGAA
ACGGCTGTCCAAAAAGGGGGCACGCTATTAGCGAACTTAGCGGATGGCGTTTTTTATCCACCTGAGCTGCAATTAGTGCT
CGCTAAGGGAAGTCCGTTACAACAGATGGCCAAGGAGGTTGATCTGCTTGCAGTCATTAAATATGATGAACTGCAACGGC
AATTGAAACAGAAGGTGAATTGGCTACAACCGCTCTTGTTTATCCTAATTGGGATCATCATTATTTGTACCTATCTCAGT
ATTTTATTACCGCTATATCATACAATGGAGGGAATTTCATGA
ATGAAGACTAAAATCACTGTTCAATTCAATACTGAATTTATGTTGCTGTTAGGGCGCTTACTGCAAAATGGTTTTTCTTT
ACAACAAGCACTTGAGTTCATGCCGATTGTTTTTCCGACACAAAAGCAGTGGCTGCATCAGGTGCAAACTGGGTTAGAAG
CAGGAAAACGACTAGCACCAAGCTTAGCGGCGGTTTCGTTTCCAACACACCTTGTTGCACAGATTGAATTGACTGAGTTG
CAGGGAAACTTAGGCGAGTGTTTGTTACATCTTGGCCAATTACAGCGAATTCAACAGAAACGGCGTAGAGAGTTAGTTGG
CGTAATTGCCTATCCCTGTTTTCTACTCCTTTTTCTCGGGGCGTTGATTGGGATGATGCAGATTTATCTTTTTCCGGAAA
TCGCGCAGTTTAACCCAACAACTTCGGCGACATCACCATTACAACTATTTTTTAGAGTGATGGGGACATTCGTTATTATG
GCTGGTGGTCTGATTAGTGTGTATTTATTCCGTTGGCATCGGCGACCGCTATTACAACGATTGGCGGCGGCATTTAGATG
GCCGTTCATCGGTAAAACGTTGCAGGCTTACTATCAGTATTGCTTATTATTTGATTTAGCGACTTGCCTGAATAACGGCT
TAAACTTGGCCGAAATGCATCAGCTTACACATCGTTTGGCGAAAACATCGTGGCTTGTACAATTAATGCAACAACTTGAA
ACGGCTGTCCAAAAAGGGGGCACGCTATTAGCGAACTTAGCGGATGGCGTTTTTTATCCACCTGAGCTGCAATTAGTGCT
CGCTAAGGGAAGTCCGTTACAACAGATGGCCAAGGAGGTTGATCTGCTTGCAGTCATTAAATATGATGAACTGCAACGGC
AATTGAAACAGAAGGTGAATTGGCTACAACCGCTCTTGTTTATCCTAATTGGGATCATCATTATTTGTACCTATCTCAGT
ATTTTATTACCGCTATATCATACAATGGAGGGAATTTCATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGB | Latilactobacillus sakei subsp. sakei 23K |
57.27 |
100 |
0.58 |