Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   PF996_RS18605 Genome accession   NZ_CP116014
Coordinates   3618688..3619377 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain SRCM124633     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3613688..3624377
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF996_RS18570 (PF996_18570) - 3613886..3614368 (-) 483 WP_022553865.1 flagellar protein FlgN -
  PF996_RS18575 (PF996_18575) flgM 3614383..3614649 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  PF996_RS18580 (PF996_18580) - 3614719..3615138 (-) 420 WP_014419009.1 TIGR03826 family flagellar region protein -
  PF996_RS18585 (PF996_18585) comFC 3615212..3615901 (-) 690 WP_217425079.1 phosphoribosyltransferase family protein Machinery gene
  PF996_RS18590 (PF996_18590) - 3615907..3616191 (-) 285 WP_017418816.1 late competence development ComFB family protein -
  PF996_RS18595 (PF996_18595) comFA 3616249..3617634 (-) 1386 WP_017418815.1 DEAD/DEAH box helicase Machinery gene
  PF996_RS18600 (PF996_18600) - 3617742..3618590 (-) 849 WP_003151387.1 DegV family protein -
  PF996_RS18605 (PF996_18605) degU 3618688..3619377 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  PF996_RS18610 (PF996_18610) degS 3619454..3620617 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  PF996_RS18615 (PF996_18615) - 3620840..3621487 (+) 648 WP_007614107.1 YigZ family protein -
  PF996_RS18620 (PF996_18620) - 3621492..3622679 (+) 1188 WP_271265672.1 LCP family protein -
  PF996_RS18625 (PF996_18625) - 3622778..3623854 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=775294 PF996_RS18605 WP_003219701.1 3618688..3619377(-) (degU) [Bacillus velezensis strain SRCM124633]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=775294 PF996_RS18605 WP_003219701.1 3618688..3619377(-) (degU) [Bacillus velezensis strain SRCM124633]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGAGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAATCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTAGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1