Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   PF996_RS18595 Genome accession   NZ_CP116014
Coordinates   3616249..3617634 (-) Length   461 a.a.
NCBI ID   WP_017418815.1    Uniprot ID   -
Organism   Bacillus velezensis strain SRCM124633     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3611249..3622634
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF996_RS18560 (PF996_18560) flgL 3611424..3612341 (-) 918 WP_065180520.1 flagellar hook-associated protein FlgL -
  PF996_RS18565 (PF996_18565) flgK 3612353..3613870 (-) 1518 WP_014419008.1 flagellar hook-associated protein FlgK -
  PF996_RS18570 (PF996_18570) - 3613886..3614368 (-) 483 WP_022553865.1 flagellar protein FlgN -
  PF996_RS18575 (PF996_18575) flgM 3614383..3614649 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  PF996_RS18580 (PF996_18580) - 3614719..3615138 (-) 420 WP_014419009.1 TIGR03826 family flagellar region protein -
  PF996_RS18585 (PF996_18585) comFC 3615212..3615901 (-) 690 WP_217425079.1 phosphoribosyltransferase family protein Machinery gene
  PF996_RS18590 (PF996_18590) - 3615907..3616191 (-) 285 WP_017418816.1 late competence development ComFB family protein -
  PF996_RS18595 (PF996_18595) comFA 3616249..3617634 (-) 1386 WP_017418815.1 DEAD/DEAH box helicase Machinery gene
  PF996_RS18600 (PF996_18600) - 3617742..3618590 (-) 849 WP_003151387.1 DegV family protein -
  PF996_RS18605 (PF996_18605) degU 3618688..3619377 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  PF996_RS18610 (PF996_18610) degS 3619454..3620617 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  PF996_RS18615 (PF996_18615) - 3620840..3621487 (+) 648 WP_007614107.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52610.07 Da        Isoelectric Point: 10.2278

>NTDB_id=775293 PF996_RS18595 WP_017418815.1 3616249..3617634(-) (comFA) [Bacillus velezensis strain SRCM124633]
MSEGASEFSEVRDFFYGRHLLRSEIPFSDQRIKRFTEKEYITAEPSIIRRKNRYVCQRCGQSDQASFAAFWAPSAKRQIT
YCRACVMMGRADELTSLYSWNQIPENSWEPVKLSWEGTLTDGQKRAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLKKAFEKVEVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKKAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQKLQSQLPVFLFVPSVHVLKKTTDYFQKLNIRAEGVHAEDTFRKDKVKRFRDGLLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVMFHFGMTNGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=775293 PF996_RS18595 WP_017418815.1 3616249..3617634(-) (comFA) [Bacillus velezensis strain SRCM124633]
ATGTCCGAAGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
CTCAGACCAGCGTATCAAGCGTTTTACAGAAAAAGAATATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCAGCTTTGCGGCATTTTGGGCGCCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGGCTGATGAACTGACATCATTATATTCTTGGAATCAAATCCCTGAAAACAG
CTGGGAGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCGGGCGGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCGGGGAAAACAGAGATGCTGTTTCCGGGTATCGAGTTT
GCGCTGAATCACGGTTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGAAGTCTCTGCTTTGTACGGCGGCAGCGAAGACAAAGGCCGCCTGACTCCGCTGATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGATTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCAGA
CACATTAAAAAAGAAGGCTGAAGCCGGTTTGCTGAAAAGCGTCCGCATACCGGCCAGATATCATCGGAAACCCCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACGGATTGGGTC
CGCCAAAAACTTCAATCACAGCTGCCGGTTTTCTTATTCGTTCCGTCTGTACACGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAACATACGGGCAGAAGGCGTACATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGGTTCAGAGACG
GCCTGCTTGACCTGCTGGTAACGACTACGATTTTAGAAAGAGGAGTTACCGTACCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCATGTTTCATTTCGGAATGACAAACGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(328-421)

Type III restriction enzyme, res subunit (ResIII)

(118-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

62.609

99.783

0.625