Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   PF996_RS18585 Genome accession   NZ_CP116014
Coordinates   3615212..3615901 (-) Length   229 a.a.
NCBI ID   WP_217425079.1    Uniprot ID   -
Organism   Bacillus velezensis strain SRCM124633     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3610212..3620901
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF996_RS18550 (PF996_18550) fliW 3610303..3610734 (-) 432 WP_007407475.1 flagellar assembly protein FliW -
  PF996_RS18555 (PF996_18555) - 3610764..3611333 (-) 570 WP_003151397.1 DUF6470 family protein -
  PF996_RS18560 (PF996_18560) flgL 3611424..3612341 (-) 918 WP_065180520.1 flagellar hook-associated protein FlgL -
  PF996_RS18565 (PF996_18565) flgK 3612353..3613870 (-) 1518 WP_014419008.1 flagellar hook-associated protein FlgK -
  PF996_RS18570 (PF996_18570) - 3613886..3614368 (-) 483 WP_022553865.1 flagellar protein FlgN -
  PF996_RS18575 (PF996_18575) flgM 3614383..3614649 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  PF996_RS18580 (PF996_18580) - 3614719..3615138 (-) 420 WP_014419009.1 TIGR03826 family flagellar region protein -
  PF996_RS18585 (PF996_18585) comFC 3615212..3615901 (-) 690 WP_217425079.1 phosphoribosyltransferase family protein Machinery gene
  PF996_RS18590 (PF996_18590) - 3615907..3616191 (-) 285 WP_017418816.1 late competence development ComFB family protein -
  PF996_RS18595 (PF996_18595) comFA 3616249..3617634 (-) 1386 WP_017418815.1 DEAD/DEAH box helicase Machinery gene
  PF996_RS18600 (PF996_18600) - 3617742..3618590 (-) 849 WP_003151387.1 DegV family protein -
  PF996_RS18605 (PF996_18605) degU 3618688..3619377 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  PF996_RS18610 (PF996_18610) degS 3619454..3620617 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25360.07 Da        Isoelectric Point: 8.4880

>NTDB_id=775292 PF996_RS18585 WP_217425079.1 3615212..3615901(-) (comFC) [Bacillus velezensis strain SRCM124633]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCTICSSRFEKIEGPVCSICGRPRESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=775292 PF996_RS18585 WP_217425079.1 3615212..3615901(-) (comFC) [Bacillus velezensis strain SRCM124633]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTTTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCACCATATGCAGCAGCCGATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCGGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTGGCCCGGTTTAAATTCAGGGGCGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTGTCCGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCGGC
CGAAGGTATGAACGTCATCTTAATAGACGATATTTATACGACGGGCGCCACACTGCATCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(144-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.352

99.127

0.598