Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   PF977_RS02915 Genome accession   NZ_CP116012
Coordinates   564756..565478 (+) Length   240 a.a.
NCBI ID   WP_033884179.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM124333     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 559756..570478
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF977_RS02890 (PF977_02890) degS 560067..561224 (+) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  PF977_RS02895 (PF977_02895) degU 561307..561996 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  PF977_RS02900 (PF977_02900) fakBA 562094..562939 (+) 846 WP_003227986.1 DegV family protein -
  PF977_RS02905 (PF977_02905) comFA 563045..564436 (+) 1392 WP_014481052.1 ATP-dependent helicase ComFA Machinery gene
  PF977_RS02910 (PF977_02910) comFB 564496..564792 (+) 297 WP_014478130.1 late competence protein ComFB -
  PF977_RS02915 (PF977_02915) comFC 564756..565478 (+) 723 WP_033884179.1 comF operon protein ComFC Machinery gene
  PF977_RS02920 (PF977_02920) yvyF 565551..565970 (+) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  PF977_RS02925 (PF977_02925) flgM 566051..566317 (+) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  PF977_RS02930 (PF977_02930) flgN 566333..566815 (+) 483 WP_015714799.1 flagellar protein FlgN -
  PF977_RS02935 (PF977_02935) flgK 566834..568357 (+) 1524 WP_015714798.1 flagellar hook-associated protein FlgK -
  PF977_RS02940 (PF977_02940) flgL 568368..569264 (+) 897 WP_015714797.1 flagellar hook-associated protein FlgL -
  PF977_RS02945 (PF977_02945) yviE 569311..569886 (+) 576 WP_015384781.1 DUF6470 family protein -
  PF977_RS02950 (PF977_02950) fliW 569907..570338 (+) 432 WP_003228007.1 flagellar assembly protein FliW -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27544.83 Da        Isoelectric Point: 9.3157

>NTDB_id=775084 PF977_RS02915 WP_033884179.1 564756..565478(+) (comFC) [Bacillus subtilis strain SRCM124333]
MSHEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKETLSRFKFRGDAEIINAFKSDFSSTFSKVYPDKHFVLVPIPLSKEREEERGFNQAQLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSERIFDTKNNSAEGMNIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=775084 PF977_RS02915 WP_033884179.1 564756..565478(+) (comFC) [Bacillus subtilis strain SRCM124333]
ATGTCACACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTACTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAGAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCACAGCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTGTC
AGAGCGCATTTTTGATACAAAAAATAATTCAGCAGAAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

98.75

100

0.988