Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   PF977_RS02895 Genome accession   NZ_CP116012
Coordinates   561307..561996 (+) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis strain SRCM124333     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 556307..566996
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF977_RS02875 (PF977_02875) tagO 556873..557949 (+) 1077 WP_003227975.1 MraY family glycosyltransferase -
  PF977_RS02880 (PF977_02880) tagV 558022..559197 (-) 1176 WP_015714802.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  PF977_RS02885 (PF977_02885) yvyE 559197..559850 (-) 654 WP_003227979.1 YigZ family protein -
  PF977_RS02890 (PF977_02890) degS 560067..561224 (+) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  PF977_RS02895 (PF977_02895) degU 561307..561996 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  PF977_RS02900 (PF977_02900) fakBA 562094..562939 (+) 846 WP_003227986.1 DegV family protein -
  PF977_RS02905 (PF977_02905) comFA 563045..564436 (+) 1392 WP_014481052.1 ATP-dependent helicase ComFA Machinery gene
  PF977_RS02910 (PF977_02910) comFB 564496..564792 (+) 297 WP_014478130.1 late competence protein ComFB -
  PF977_RS02915 (PF977_02915) comFC 564756..565478 (+) 723 WP_033884179.1 comF operon protein ComFC Machinery gene
  PF977_RS02920 (PF977_02920) yvyF 565551..565970 (+) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  PF977_RS02925 (PF977_02925) flgM 566051..566317 (+) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  PF977_RS02930 (PF977_02930) flgN 566333..566815 (+) 483 WP_015714799.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=775082 PF977_RS02895 WP_003219701.1 561307..561996(+) (degU) [Bacillus subtilis strain SRCM124333]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=775082 PF977_RS02895 WP_003219701.1 561307..561996(+) (degU) [Bacillus subtilis strain SRCM124333]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGAGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTTCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGAATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGTTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1