Detailed information    

insolico Bioinformatically predicted

Overview

Name   degS   Type   Regulator
Locus tag   PF977_RS02890 Genome accession   NZ_CP116012
Coordinates   560067..561224 (+) Length   385 a.a.
NCBI ID   WP_003227983.1    Uniprot ID   A0A199WDV9
Organism   Bacillus subtilis strain SRCM124333     
Function   phosphorylation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 555067..566224
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF977_RS02870 (PF977_02870) tuaH 555535..556728 (+) 1194 WP_080475153.1 teichuronic acid biosynthesis protein TuaH -
  PF977_RS02875 (PF977_02875) tagO 556873..557949 (+) 1077 WP_003227975.1 MraY family glycosyltransferase -
  PF977_RS02880 (PF977_02880) tagV 558022..559197 (-) 1176 WP_015714802.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  PF977_RS02885 (PF977_02885) yvyE 559197..559850 (-) 654 WP_003227979.1 YigZ family protein -
  PF977_RS02890 (PF977_02890) degS 560067..561224 (+) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  PF977_RS02895 (PF977_02895) degU 561307..561996 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  PF977_RS02900 (PF977_02900) fakBA 562094..562939 (+) 846 WP_003227986.1 DegV family protein -
  PF977_RS02905 (PF977_02905) comFA 563045..564436 (+) 1392 WP_014481052.1 ATP-dependent helicase ComFA Machinery gene
  PF977_RS02910 (PF977_02910) comFB 564496..564792 (+) 297 WP_014478130.1 late competence protein ComFB -
  PF977_RS02915 (PF977_02915) comFC 564756..565478 (+) 723 WP_033884179.1 comF operon protein ComFC Machinery gene
  PF977_RS02920 (PF977_02920) yvyF 565551..565970 (+) 420 WP_003227995.1 TIGR03826 family flagellar region protein -

Sequence

Protein


Download         Length: 385 a.a.        Molecular weight: 44957.76 Da        Isoelectric Point: 6.2957

>NTDB_id=775081 PF977_RS02890 WP_003227983.1 560067..561224(+) (degS) [Bacillus subtilis strain SRCM124333]
MNKTKMDSKVLDSILMKMLKTVDGSKDEVFQIGEQSRQQYEQLVEELKQIKQQVYEVIELGDKLEVQTRHARNRLSEVSR
NFHRFSEEEIRNAYEKAHKLQVELTMIQQREKQLRERRDDLERRLLGLQEIIERSESLVSQITVVLNYLNQDLREVGLLL
ADAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGAEDGFQEIKNLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLYTTEEYNGKVKIHFQCIGETEDQRLAPQFEVALFRLAQEAVSNALKHSESEEITVKVEI
TKDFVILMIKDNGKGFDLKEAKEKKNKSFGLLGMKERVDLLEGTMTIDSKIGLGTFIMIKVPLSL

Nucleotide


Download         Length: 1158 bp        

>NTDB_id=775081 PF977_RS02890 WP_003227983.1 560067..561224(+) (degS) [Bacillus subtilis strain SRCM124333]
ATGAATAAAACAAAGATGGATTCCAAAGTGCTGGATTCTATTTTGATGAAGATGCTGAAAACCGTTGACGGGAGCAAGGA
CGAGGTTTTTCAAATCGGGGAGCAGTCACGCCAGCAGTATGAACAGCTGGTCGAAGAACTGAAACAAATTAAACAGCAGG
TGTATGAAGTGATCGAGCTTGGCGATAAACTTGAAGTGCAAACCCGCCATGCGAGAAACCGTTTATCCGAGGTCAGCCGT
AATTTTCATAGATTCAGTGAAGAGGAAATCCGCAATGCTTATGAAAAAGCCCATAAGCTGCAGGTAGAATTGACGATGAT
CCAGCAGCGTGAGAAGCAATTGCGCGAACGGCGGGACGATTTGGAGCGCAGATTGCTAGGGCTTCAGGAAATCATTGAGC
GGTCAGAATCATTAGTAAGCCAAATTACAGTTGTGCTCAACTACTTGAATCAGGATTTGCGCGAAGTTGGACTGCTTCTT
GCTGATGCTCAGGCAAAACAGGATTTCGGCTTAAGAATTATTGAGGCGCAGGAAGAAGAGCGAAAAAGAGTCTCAAGAGA
AATCCATGACGGACCCGCTCAAATGCTGGCGAATGTTATGATGAGGTCGGAATTAATCGAGCGGATTTTCCGTGACCGGG
GCGCAGAGGACGGATTCCAAGAAATTAAAAATCTACGCCAAAATGTTCGGAATGCCCTTTACGAAGTGAGAAGGATTATA
TATGATTTAAGACCGATGGCCCTTGATGACCTAGGCCTGATTCCAACTTTAAGAAAATATCTATATACAACCGAGGAATA
TAACGGGAAGGTCAAAATACATTTTCAGTGCATTGGAGAAACAGAGGATCAGAGGCTAGCGCCTCAGTTTGAGGTTGCGC
TCTTCAGGCTCGCACAGGAAGCTGTGTCTAATGCGCTAAAGCATTCTGAATCTGAAGAAATTACAGTCAAAGTTGAGATC
ACAAAGGATTTTGTGATTTTAATGATAAAAGATAACGGTAAAGGGTTCGACCTGAAGGAAGCGAAAGAGAAGAAAAACAA
ATCATTCGGCTTGCTGGGCATGAAAGAAAGAGTAGATTTATTGGAAGGAACGATGACAATAGATTCGAAAATAGGTCTTG
GGACATTTATTATGATTAAGGTTCCGTTATCTCTTTGA

Domains

Predicted by InterproScan.

Histidine kinase (HisKA_3)

(180-248)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(291-384)

Sensor protein DegS (DegS)

(12-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WDV9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degS Bacillus subtilis subsp. subtilis str. 168

100

100

1