Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   PF977_RS00095 Genome accession   NZ_CP116012
Coordinates   17728..18246 (+) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis strain SRCM124333     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 12728..23246
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF977_RS00075 (PF977_00075) yyzM 13802..14008 (+) 207 WP_003226838.1 DUF951 domain-containing protein -
  PF977_RS00080 (PF977_00080) yyaE 14059..16062 (+) 2004 WP_032676927.1 molybdopterin-dependent oxidoreductase -
  PF977_RS00085 (PF977_00085) ychF 16189..17289 (+) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  PF977_RS00090 (PF977_00090) rpsF 17400..17687 (+) 288 WP_003244064.1 30S ribosomal protein S6 -
  PF977_RS00095 (PF977_00095) ssbA 17728..18246 (+) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  PF977_RS00100 (PF977_00100) rpsR 18290..18529 (+) 240 WP_003219224.1 30S ribosomal protein S18 -
  PF977_RS00105 (PF977_00105) xth 18591..19349 (+) 759 WP_003226843.1 exodeoxyribonuclease III -
  PF977_RS00110 (PF977_00110) ccpB 19408..20343 (+) 936 WP_003226845.1 transcriptional regulator CcpB -
  PF977_RS00115 (PF977_00115) yyaH 20399..20779 (+) 381 WP_029726089.1 VOC family protein -
  PF977_RS00120 (PF977_00120) maa 20797..21351 (+) 555 WP_003226849.1 sugar O-acetyltransferase -
  PF977_RS00125 (PF977_00125) yyaJ 21385..22740 (-) 1356 WP_003226851.1 MFS transporter -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=775073 PF977_RS00095 WP_003219228.1 17728..18246(+) (ssbA) [Bacillus subtilis strain SRCM124333]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=775073 PF977_RS00095 WP_003219228.1 17728..18246(+) (ssbA) [Bacillus subtilis strain SRCM124333]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378