Detailed information NTG0077504

Bioinformatically predicted

Overview

• Name: ssb
• Type: Machinery gene
• Locus tag: H7R74_RS02385
• Genome accession: NZ_AP022281
• Coordinates: 494419..495006 (-)
• Length: 195 a.a.
• NCBI ID: WP_005340181.1
• Uniprot ID: A0A165S798
• Organism: Aeromonas veronii strain WP8-W19-CRE-03
• Function: ssDNA binding (predicted from homology) DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Genomic island	481757..494253	494419..495006	flank	166

Gene organization within MGE regions

Location: 481757..495006

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H7R74_RS02330 (WP8W19C03_04430)	-	481871..482341 (+)	471	WP_017780886.1	hypothetical protein	-
H7R74_RS02335 (WP8W19C03_04440)	-	482551..482742 (+)	192	WP_017780887.1	hypothetical protein	-
H7R74_RS02340 (WP8W19C03_04450)	tetR	483074..483709 (-)	636	WP_017780888.1	tetracycline resistance transcriptional repressor TetR	-
H7R74_RS02345 (WP8W19C03_04460)	tet(E)	483790..485007 (+)	1218	WP_017780889.1	tetracycline efflux MFS transporter Tet(E)	-
H7R74_RS02350 (WP8W19C03_04470)	-	485095..485763 (-)	669	WP_017780890.1	hypothetical protein	-
H7R74_RS22575	-	486035..486199 (-)	165	Protein_453	IS5/IS1182 family transposase	-
H7R74_RS02355 (WP8W19C03_04480)	-	486417..488579 (-)	2163	WP_069785361.1	AAA family ATPase	-
H7R74_RS02360 (WP8W19C03_04490)	-	488576..489016 (-)	441	WP_017780892.1	VPA1267 family protein	-
H7R74_RS02365	-	489013..489492 (-)	480	WP_021140823.1	hypothetical protein	-
H7R74_RS02370 (WP8W19C03_04500)	-	489480..491357 (-)	1878	WP_034524358.1	integrase	-
H7R74_RS02375 (WP8W19C03_04510)	-	491367..492935 (-)	1569	WP_174218922.1	site-specific integrase	-
H7R74_RS02380 (WP8W19C03_04520)	-	492928..494253 (-)	1326	WP_043147737.1	site-specific integrase	-
H7R74_RS02385 (WP8W19C03_04530)	ssb	494419..495006 (-)	588	WP_005340181.1	single-stranded DNA-binding protein	Machinery gene

Sequence

Protein

• Length: 195 a.a.
• Molecular weight: 21583.11 Da
• Isoelectric Point: 5.9301

>NTDB_id=77504 H7R74_RS02385 WP_005340181.1 494419..495006(-) (ssb) [Aeromonas veronii strain WP8-W19-CRE-03]
MASRGINKVILIGNLGQDPEVRYMPSGGAVTNITLATSETWRDKQTGEQKERTEWHRVVFMGKLAEVAGEYLKKGSQVYV
EGKLQTRKWQDQSGQERYTTEVLVDSFTGVMQMLGGRPQGGQGMGQNMGGQSQGNWGQPQQSMPAQQPMNQQRPAPAPQQ
NMQPQGGYGRPAQQPQSAPPVYNEPPMDFDDDIPF

Nucleotide

• Length: 588 bp

>NTDB_id=77504 H7R74_RS02385 WP_005340181.1 494419..495006(-) (ssb) [Aeromonas veronii strain WP8-W19-CRE-03]
ATGGCCAGTCGAGGCATCAATAAAGTCATTCTGATCGGTAACCTCGGGCAAGACCCGGAAGTACGCTACATGCCGAGTGG
CGGTGCTGTGACCAACATTACTCTGGCTACCTCCGAAACCTGGCGCGACAAGCAGACCGGTGAGCAGAAAGAGCGTACCG
AATGGCACCGCGTTGTTTTCATGGGCAAGTTGGCCGAAGTGGCTGGCGAGTACCTGAAGAAGGGCTCCCAGGTCTATGTG
GAAGGCAAACTGCAGACCCGCAAATGGCAGGATCAGAGCGGCCAGGAGCGCTACACCACTGAAGTGCTGGTCGACAGCTT
CACTGGCGTGATGCAGATGCTGGGTGGCCGTCCGCAAGGCGGTCAGGGTATGGGCCAGAACATGGGTGGCCAATCCCAGG
GTAACTGGGGTCAGCCACAGCAGAGCATGCCTGCCCAGCAGCCGATGAATCAGCAGCGCCCGGCACCGGCTCCGCAGCAG
AACATGCAGCCGCAAGGCGGTTATGGCCGTCCTGCCCAGCAGCCGCAGTCTGCGCCGCCGGTATATAACGAGCCGCCGAT
GGATTTCGACGACGATATCCCGTTCTAG

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (6-107)

3D structure

• AlphaFold DB: A0A165S798

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssb	Vibrio cholerae strain A1552	69.347	100	0.708
ssb	Glaesserella parasuis strain SC1401	53.886	98.974	0.533
ssb	Neisseria meningitidis MC58	46.597	97.949	0.456
ssb	Neisseria gonorrhoeae MS11	46.842	97.436	0.456