Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   PF975_RS02845 Genome accession   NZ_CP116010
Coordinates   557368..558057 (+) Length   229 a.a.
NCBI ID   WP_197535984.1    Uniprot ID   -
Organism   Bacillus velezensis strain SRCM123815     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 552368..563057
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF975_RS02820 (PF975_02820) degS 552652..553815 (+) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  PF975_RS02825 (PF975_02825) degU 553892..554581 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  PF975_RS02830 (PF975_02830) - 554679..555527 (+) 849 WP_003151387.1 DegV family protein -
  PF975_RS02835 (PF975_02835) comFA 555635..557020 (+) 1386 WP_014419012.1 DEAD/DEAH box helicase Machinery gene
  PF975_RS02840 (PF975_02840) - 557078..557362 (+) 285 WP_014419011.1 late competence development ComFB family protein -
  PF975_RS02845 (PF975_02845) comFC 557368..558057 (+) 690 WP_197535984.1 ComF family protein Machinery gene
  PF975_RS02850 (PF975_02850) - 558131..558550 (+) 420 WP_014419009.1 TIGR03826 family flagellar region protein -
  PF975_RS02855 (PF975_02855) flgM 558620..558886 (+) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  PF975_RS02860 (PF975_02860) - 558901..559383 (+) 483 WP_088056401.1 flagellar protein FlgN -
  PF975_RS02865 (PF975_02865) flgK 559399..560916 (+) 1518 WP_014419008.1 flagellar hook-associated protein FlgK -
  PF975_RS02870 (PF975_02870) flgL 560928..561845 (+) 918 WP_014419007.1 flagellar hook-associated protein FlgL -
  PF975_RS02875 (PF975_02875) - 561936..562505 (+) 570 WP_053285365.1 DUF6470 family protein -
  PF975_RS02880 (PF975_02880) fliW 562535..562966 (+) 432 WP_007407475.1 flagellar assembly protein FliW -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25250.91 Da        Isoelectric Point: 7.7729

>NTDB_id=774937 PF975_RS02845 WP_197535984.1 557368..558057(+) (comFC) [Bacillus velezensis strain SRCM123815]
MNCLLCDSPISSSLTWRSLFSLAPEQEICSICSSQFEKIEGPVCSICGRPQESNEKCADCAARESKTEKCFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=774937 PF975_RS02845 WP_197535984.1 557368..558057(+) (comFC) [Bacillus velezensis strain SRCM123815]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GATATGCAGCATATGCAGCAGCCAATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGTGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTGGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTGTCCGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CGAAGGTATGAACGTCATCTTAATAGATGATATTTATACGACGGGCGCCACACTTCACCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGAAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(144-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.352

99.127

0.598