Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   PF975_RS02825 Genome accession   NZ_CP116010
Coordinates   553892..554581 (+) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain SRCM123815     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 548892..559581
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF975_RS02805 (PF975_02805) - 549397..550473 (+) 1077 WP_003151382.1 glycosyltransferase family 4 protein -
  PF975_RS02810 (PF975_02810) - 550563..551777 (-) 1215 WP_014419013.1 LCP family protein -
  PF975_RS02815 (PF975_02815) - 551782..552429 (-) 648 WP_007614107.1 YigZ family protein -
  PF975_RS02820 (PF975_02820) degS 552652..553815 (+) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  PF975_RS02825 (PF975_02825) degU 553892..554581 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  PF975_RS02830 (PF975_02830) - 554679..555527 (+) 849 WP_003151387.1 DegV family protein -
  PF975_RS02835 (PF975_02835) comFA 555635..557020 (+) 1386 WP_014419012.1 DEAD/DEAH box helicase Machinery gene
  PF975_RS02840 (PF975_02840) - 557078..557362 (+) 285 WP_014419011.1 late competence development ComFB family protein -
  PF975_RS02845 (PF975_02845) comFC 557368..558057 (+) 690 WP_197535984.1 ComF family protein Machinery gene
  PF975_RS02850 (PF975_02850) - 558131..558550 (+) 420 WP_014419009.1 TIGR03826 family flagellar region protein -
  PF975_RS02855 (PF975_02855) flgM 558620..558886 (+) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  PF975_RS02860 (PF975_02860) - 558901..559383 (+) 483 WP_088056401.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=774935 PF975_RS02825 WP_003219701.1 553892..554581(+) (degU) [Bacillus velezensis strain SRCM123815]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=774935 PF975_RS02825 WP_003219701.1 553892..554581(+) (degU) [Bacillus velezensis strain SRCM123815]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTTTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGAGGCTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAATCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTAGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1