Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   PF975_RS00100 Genome accession   NZ_CP116010
Coordinates   19017..19535 (+) Length   172 a.a.
NCBI ID   WP_004392979.1    Uniprot ID   A0A9Q3LJE1
Organism   Bacillus velezensis strain SRCM123815     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 14017..24535
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF975_RS00080 (PF975_00080) - 15095..15301 (+) 207 WP_004392973.1 DUF951 domain-containing protein -
  PF975_RS00085 (PF975_00085) - 15348..17351 (+) 2004 WP_088056348.1 molybdopterin-dependent oxidoreductase -
  PF975_RS00090 (PF975_00090) ychF 17478..18578 (+) 1101 WP_088056349.1 redox-regulated ATPase YchF -
  PF975_RS00095 (PF975_00095) rpsF 18690..18977 (+) 288 WP_004392977.1 30S ribosomal protein S6 -
  PF975_RS00100 (PF975_00100) ssbA 19017..19535 (+) 519 WP_004392979.1 single-stranded DNA-binding protein SsbA Machinery gene
  PF975_RS00105 (PF975_00105) rpsR 19579..19818 (+) 240 WP_004392983.1 30S ribosomal protein S18 -
  PF975_RS00110 (PF975_00110) - 20013..20594 (+) 582 WP_014419384.1 bifunctional transcriptional activator/DNA repair enzyme AdaA -
  PF975_RS00115 (PF975_00115) - 20591..21148 (+) 558 WP_014419383.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  PF975_RS19850 - 21145..21711 (+) 567 Protein_23 endonuclease/exonuclease/phosphatase family protein -
  PF975_RS00135 (PF975_00135) - 21774..22712 (+) 939 WP_014419382.1 LacI family DNA-binding transcriptional regulator -
  PF975_RS00140 (PF975_00140) - 22769..23149 (+) 381 WP_014419381.1 VOC family protein -
  PF975_RS00145 (PF975_00145) - 23181..24512 (-) 1332 WP_014419380.1 MFS transporter -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18745.31 Da        Isoelectric Point: 4.7621

>NTDB_id=774927 PF975_RS00100 WP_004392979.1 19017..19535(+) (ssbA) [Bacillus velezensis strain SRCM123815]
MLNRVVLVGRLTKDPELRYTPSGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNSGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=774927 PF975_RS00100 WP_004392979.1 19017..19535(+) (ssbA) [Bacillus velezensis strain SRCM123815]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAGCGGTGCGGCTGTCGC
CACGTTTACTCTTGCTGTGAATCGTACATTCACGAACCAGTCCGGAGAACGTGAAGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTTCTTAAAAAAGGAAGCCTTGCCGGCGTAGACGGCCGACTCCAGACAAGA
AATTATGAAAACCAGCAGGGACAGCGTGTCTTCGTGACAGAAGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCTAAAAA
CAGCGGCGGTTCTGGATCAGGCGGATACAACGAAGGAAACAGCGGCGGAGGCCAATACTTTGGCGGAGGCCAAAATGATA
ATCCGTTCGGCGGAAATCAGAACAACCAGAGACGAAATCAAGGGAACAGCTTTAATGATGATCCATTTGCCAACGACGGC
AAGCCGATTGACATCTCGGATGATGATCTTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

98.837

100

0.988
  ssb Latilactobacillus sakei subsp. sakei 23K

58.757

100

0.605
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378