Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PE066_RS10430 Genome accession   NZ_CP116009
Coordinates   2223180..2223671 (-) Length   163 a.a.
NCBI ID   WP_271236469.1    Uniprot ID   -
Organism   Ramlibacter tataouinensis strain DMF-7     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2218180..2228671
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PE066_RS10405 (PE066_10405) - 2218449..2219564 (-) 1116 WP_271236464.1 Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha -
  PE066_RS10410 (PE066_10410) - 2219728..2220450 (+) 723 WP_271236465.1 hypothetical protein -
  PE066_RS10415 (PE066_10415) - 2220462..2220941 (+) 480 WP_271236466.1 NUDIX hydrolase -
  PE066_RS10420 (PE066_10420) mnmA 2220987..2222096 (+) 1110 WP_271236467.1 tRNA 2-thiouridine(34) synthase MnmA -
  PE066_RS10425 (PE066_10425) - 2222074..2223042 (-) 969 WP_271236468.1 nitronate monooxygenase family protein -
  PE066_RS10430 (PE066_10430) ssb 2223180..2223671 (-) 492 WP_271236469.1 single-stranded DNA-binding protein Machinery gene
  PE066_RS10435 (PE066_10435) - 2223708..2224916 (-) 1209 WP_271236470.1 MFS transporter -
  PE066_RS10440 (PE066_10440) uvrA 2225053..2227989 (+) 2937 WP_271236471.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 18025.09 Da        Isoelectric Point: 6.4875

>NTDB_id=774912 PE066_RS10430 WP_271236469.1 2223180..2223671(-) (ssb) [Ramlibacter tataouinensis strain DMF-7]
MASVNKVIIVGNLGRDPEMRTFPSGGRVCNVTIATTDKWKDKQSGEPREHTEWHRVVFNDRLAEIAGEYLRKGSQVYVEG
TLRTRKWTDQQGVEKYSTEIRADTMQMLGRREGMGGPSAGDDYEGGGERRAPAARQPAPAPQRAPAAPKSASGFEDMDDD
IPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=774912 PE066_RS10430 WP_271236469.1 2223180..2223671(-) (ssb) [Ramlibacter tataouinensis strain DMF-7]
ATGGCATCCGTCAACAAAGTCATCATCGTTGGCAACCTCGGCCGCGATCCCGAGATGCGCACCTTCCCGAGCGGCGGTCG
CGTCTGCAACGTCACCATCGCCACCACCGACAAGTGGAAGGACAAGCAGTCCGGCGAGCCGCGCGAGCACACCGAATGGC
ACCGCGTGGTGTTCAACGACCGGCTGGCCGAGATCGCCGGCGAGTACCTCCGGAAGGGCTCGCAGGTGTATGTCGAGGGC
ACCCTGCGCACCCGCAAGTGGACCGACCAGCAGGGCGTGGAGAAGTACAGCACCGAGATCCGCGCCGACACCATGCAGAT
GCTGGGCCGCCGCGAAGGCATGGGCGGCCCCTCGGCCGGTGACGACTACGAAGGCGGCGGCGAGCGCCGCGCCCCGGCCG
CGCGCCAGCCGGCCCCGGCGCCCCAGCGCGCCCCGGCCGCTCCCAAGTCCGCGTCCGGCTTCGAGGACATGGACGACGAC
ATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.648

100

0.577
  ssb Glaesserella parasuis strain SC1401

48.37

100

0.546
  ssb Neisseria gonorrhoeae MS11

45.977

100

0.491
  ssb Neisseria meningitidis MC58

45.402

100

0.485