Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   PE794_RS09385 Genome accession   NZ_CP115971
Coordinates   1985770..1986924 (+) Length   384 a.a.
NCBI ID   WP_005599199.1    Uniprot ID   -
Organism   Actinobacillus pleuropneumoniae strain HBS1     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1980770..1991924
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PE794_RS09355 (PE794_09355) - 1980873..1981612 (+) 740 Protein_1794 hypothetical protein -
  PE794_RS09360 (PE794_09360) - 1981736..1981924 (-) 189 WP_005599189.1 hypothetical protein -
  PE794_RS09365 (PE794_09365) - 1981958..1982392 (+) 435 WP_005599190.1 factor H binding protein domain-containing protein -
  PE794_RS09370 (PE794_09370) - 1982695..1983942 (+) 1248 WP_005599192.1 surface lipoprotein assembly modifier -
  PE794_RS09375 (PE794_09375) rfaD 1984006..1984932 (-) 927 WP_005599195.1 ADP-glyceromanno-heptose 6-epimerase -
  PE794_RS09380 (PE794_09380) def 1985072..1985584 (-) 513 WP_005599196.1 peptide deformylase -
  PE794_RS09385 (PE794_09385) dprA 1985770..1986924 (+) 1155 WP_005599199.1 DNA-processing protein DprA Machinery gene
  PE794_RS09390 (PE794_09390) - 1986968..1988974 (-) 2007 WP_043991915.1 OPT family oligopeptide transporter -
  PE794_RS09395 (PE794_09395) - 1989196..1990551 (-) 1356 WP_005599204.1 PTS ascorbate transporter subunit IIC -
  PE794_RS09400 (PE794_09400) - 1990560..1990832 (-) 273 WP_005599206.1 PTS sugar transporter subunit IIB -
  PE794_RS09405 (PE794_09405) secE 1991135..1991548 (+) 414 WP_005599209.1 preprotein translocase subunit SecE -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 42843.11 Da        Isoelectric Point: 5.4205

>NTDB_id=774741 PE794_RS09385 WP_005599199.1 1985770..1986924(+) (dprA) [Actinobacillus pleuropneumoniae strain HBS1]
MSQADLLKLLQIPQLGAQRIARLLSEVDFAQFCQYDKRQLQQIGWNEKQIQRWFNPEMRWIDNALTWAERPNQHLLSLFD
EEYPFLLRQISIAPPVLFVRGSLSSLSLPQIAIVGSRDFSAYGEYWAGYFSEQLVKHHLAVTSGLAIGIDGFCHQRAVAE
QGITIAVLGSGLDQVYPARHKKLAEQIVESGGALVSEFFPNQPPLAENFPRRNRIISGLSLGTLVVEATLNSGSLITARY
ALEQGREVFALPNSVQNPYAQGCHKLIKEGAVLTETIEDILQAIQYQLPDQPWQQALFEPPQAVENAQFFTKADVPNKVN
HLAKKLPELTACQQQIVAHISLEPISIDDLAKATSLEVETLLVELLGLELLSVIKQVSGGYVRQ

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=774741 PE794_RS09385 WP_005599199.1 1985770..1986924(+) (dprA) [Actinobacillus pleuropneumoniae strain HBS1]
ATGTCTCAGGCTGATTTACTGAAATTATTGCAGATTCCGCAACTGGGGGCGCAGCGCATTGCTCGTCTGTTATCCGAAGT
GGATTTTGCCCAATTTTGCCAATATGACAAACGCCAATTACAACAAATTGGTTGGAACGAGAAACAGATTCAACGCTGGT
TCAATCCGGAAATGCGTTGGATTGATAATGCTCTCACGTGGGCGGAGCGGCCGAATCAACACTTATTGAGCTTATTTGAT
GAGGAATATCCGTTTTTATTGCGGCAAATCAGCATCGCACCGCCGGTGTTATTTGTGCGAGGTTCGCTAAGTAGTTTGAG
CTTACCGCAAATTGCGATTGTCGGTAGTCGAGACTTTTCCGCCTACGGAGAATACTGGGCGGGCTATTTTAGCGAGCAAT
TGGTTAAACATCATTTGGCGGTTACTAGCGGACTTGCAATCGGCATAGACGGTTTTTGCCATCAGCGAGCGGTAGCGGAA
CAGGGTATTACGATTGCTGTGTTGGGCAGCGGTTTAGATCAAGTCTATCCGGCAAGGCACAAAAAATTGGCGGAGCAAAT
TGTCGAAAGCGGCGGGGCGTTAGTGTCGGAATTTTTTCCGAATCAACCGCCGCTTGCCGAAAATTTCCCTCGTCGTAATC
GCATTATCAGCGGTTTGTCACTCGGTACGTTAGTAGTGGAAGCCACATTAAATAGCGGTTCGCTGATTACCGCCCGTTAT
GCGTTGGAACAAGGGCGAGAAGTGTTTGCATTACCGAATTCGGTACAAAATCCGTATGCACAAGGCTGTCATAAACTGAT
CAAAGAAGGGGCGGTTTTAACCGAAACGATAGAGGATATTTTACAGGCAATTCAATATCAACTGCCGGATCAGCCTTGGC
AACAGGCTCTGTTTGAACCGCCACAAGCGGTTGAAAACGCACAATTTTTTACAAAAGCAGATGTGCCGAATAAGGTCAAT
CATCTTGCAAAAAAATTGCCGGAATTAACCGCTTGTCAGCAACAAATTGTGGCGCATATTAGTCTTGAACCGATTTCGAT
TGACGATTTGGCTAAGGCGACTTCATTGGAGGTGGAAACACTGTTAGTCGAGTTACTGGGTTTGGAATTATTAAGTGTGA
TTAAGCAGGTAAGCGGCGGTTATGTCAGACAATAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(69-274)

DprA winged helix domain (DprA_WH)

(325-380)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Glaesserella parasuis strain SC1401

74.934

98.698

0.74
  dprA Vibrio campbellii strain DS40M4

46.719

99.219

0.464
  dprA Haemophilus influenzae Rd KW20

49.28

90.365

0.445
  dprA Vibrio cholerae strain A1552

41.86

100

0.422
  dprA Legionella pneumophila strain ERS1305867

37.598

99.74

0.375