Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PIB19_RS15435 Genome accession   NZ_CP115960
Coordinates   3060257..3060811 (-) Length   184 a.a.
NCBI ID   WP_271238073.1    Uniprot ID   -
Organism   Sphingomonas sp. 7/4-4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3055257..3065811
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PIB19_RS15400 (PIB19_15400) - 3055330..3055542 (-) 213 WP_271238066.1 helix-turn-helix domain-containing protein -
  PIB19_RS15405 (PIB19_15405) - 3055782..3056374 (+) 593 Protein_3084 NAD(P)H-dependent oxidoreductase -
  PIB19_RS15410 (PIB19_15410) - 3056774..3058036 (+) 1263 WP_271238068.1 homoserine O-acetyltransferase -
  PIB19_RS15415 (PIB19_15415) - 3057990..3058310 (+) 321 WP_271238069.1 GNAT family N-acetyltransferase -
  PIB19_RS15420 (PIB19_15420) metW 3058307..3058927 (+) 621 WP_271238070.1 methionine biosynthesis protein MetW -
  PIB19_RS15425 (PIB19_15425) - 3058924..3059787 (+) 864 WP_271238071.1 pirin family protein -
  PIB19_RS15430 (PIB19_15430) - 3059784..3060236 (-) 453 WP_271238072.1 hypothetical protein -
  PIB19_RS15435 (PIB19_15435) ssb 3060257..3060811 (-) 555 WP_271238073.1 single-stranded DNA-binding protein Machinery gene
  PIB19_RS15440 (PIB19_15440) - 3060853..3061026 (+) 174 WP_271238074.1 DUF4169 family protein -
  PIB19_RS15445 (PIB19_15445) - 3061287..3061793 (-) 507 WP_271238075.1 cupin domain-containing protein -
  PIB19_RS15450 (PIB19_15450) - 3062176..3062613 (-) 438 WP_271238076.1 hypothetical protein -
  PIB19_RS15455 (PIB19_15455) - 3062697..3063116 (-) 420 Protein_3094 RNA 3'-terminal phosphate cyclase -
  PIB19_RS15460 (PIB19_15460) - 3063113..3063910 (-) 798 WP_271238077.1 nucleotidyltransferase domain-containing protein -
  PIB19_RS15465 (PIB19_15465) - 3063948..3065174 (-) 1227 WP_271238078.1 RtcB family protein -

Sequence

Protein


Download         Length: 184 a.a.        Molecular weight: 19067.75 Da        Isoelectric Point: 5.0500

>NTDB_id=774638 PIB19_RS15435 WP_271238073.1 3060257..3060811(-) (ssb) [Sphingomonas sp. 7/4-4]
MAGSVNKVILVGNLGRDPESRSFQNGGKVVELRIATSESWKDRGTGERKEKTEWHTVKVFNEGLANVAEKYLRKGSKVYI
EGALQTRKWQDQSGADRYSTEIVLQGFNSVLTMLDGAPGQGGGAGRSGAGGGEDWGAGGGDEFSGQSSSRGAGSGGGNFN
GGGQKSGAGFGGGFPDDLDDDVPF

Nucleotide


Download         Length: 555 bp        

>NTDB_id=774638 PIB19_RS15435 WP_271238073.1 3060257..3060811(-) (ssb) [Sphingomonas sp. 7/4-4]
ATGGCCGGCAGCGTCAATAAGGTCATCCTGGTCGGCAATCTCGGCCGCGATCCCGAATCGCGCTCGTTCCAGAACGGCGG
CAAGGTGGTCGAGCTCCGCATCGCCACGTCGGAGAGCTGGAAGGATCGCGGCACCGGCGAGCGCAAGGAGAAGACCGAGT
GGCACACGGTCAAGGTCTTCAACGAGGGCCTCGCCAATGTCGCCGAGAAATATCTGCGCAAGGGCAGCAAGGTCTATATC
GAAGGCGCGCTCCAGACCCGTAAGTGGCAGGACCAGTCGGGTGCCGACCGCTATTCGACCGAGATCGTGCTCCAGGGCTT
CAATTCGGTGCTGACCATGCTCGACGGTGCGCCCGGCCAGGGCGGCGGCGCGGGCCGCAGCGGCGCTGGCGGCGGCGAGG
ACTGGGGTGCCGGCGGCGGCGACGAGTTCTCGGGCCAGTCGTCGAGCCGCGGCGCCGGCAGCGGCGGCGGCAATTTCAAC
GGCGGCGGCCAGAAGAGCGGCGCGGGCTTCGGCGGCGGCTTCCCCGACGATCTCGACGACGACGTGCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

49.215

100

0.511
  ssb Vibrio cholerae strain A1552

48.889

97.826

0.478
  ssb Neisseria meningitidis MC58

37.569

98.37

0.37
  ssb Neisseria gonorrhoeae MS11

36.022

100

0.364