NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	PG903_RS13180	Genome accession	NZ_CP115952
Coordinates	2754112..2754993 (+)	Length	293 a.a.
NCBI ID	WP_043892401.1	Uniprot ID	A0AAP7ZP00
Organism	Ralstonia solanacearum CFBP2957
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2749112..2759993

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PG903_RS13165	-	2749547..2750824 (+)	1278	WP_042590559.1	HlyC/CorC family transporter	-
PG903_RS13170	pilB	2751072..2752799 (+)	1728	WP_013205095.1	type IV-A pilus assembly ATPase PilB	Machinery gene
PG903_RS13175	pilG	2752844..2754109 (+)	1266	WP_013205094.1	type II secretion system F family protein	Machinery gene
PG903_RS13180	pilD	2754112..2754993 (+)	882	WP_043892401.1	prepilin peptidase	Machinery gene
PG903_RS13185	coaE	2755006..2755620 (+)	615	WP_013205093.1	dephospho-CoA kinase	-
PG903_RS13190	zapD	2755738..2756496 (+)	759	WP_013205092.1	cell division protein ZapD	-
PG903_RS13195	yacG	2756512..2756730 (+)	219	WP_013205091.1	DNA gyrase inhibitor YacG	-
PG903_RS13200	-	2756723..2757184 (-)	462	WP_042590562.1	NUDIX domain-containing protein	-
PG903_RS13205	-	2757162..2758046 (-)	885	WP_013205089.1	ATP-binding protein	-
PG903_RS13210	argJ	2758062..2759291 (-)	1230	WP_013205088.1	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	-

Sequence

Protein

Download Length: 293 a.a. Molecular weight: 31636.67 Da Isoelectric Point: 7.6173

                                >NTDB_id=774590 PG903_RS13180 WP_043892401.1 2754112..2754993(+) (pilD) [Ralstonia solanacearum CFBP2957]

MSGMFAIPTLALLPAWFVIGAAALLGLLVGSFLNVVIHRLPRMIEREEANYIAELRNEPLPHPEPYNLVVPRSACPSCGH

QIKAIENIPVISWLALRGRCSACKTPISWRYPAVELVTCVLTGACLWHFGPTWVAVASAALLWFLIAATMIDADTQLLPD

AITQPLLWLGLLVNLFDMFARLPDAVIGAMAGYLFLWAIYWAYKLLRGREGMGYGDFKLMAALGAWFGWQALPLLILLSS

VVGLVFGAARIARGAESDSPFSFGPFIAGAGVIALLAGPQLVALTGLAPLLAR

Nucleotide

Download Length: 882 bp

                                >NTDB_id=774590 PG903_RS13180 WP_043892401.1 2754112..2754993(+) (pilD) [Ralstonia solanacearum CFBP2957]

ATGTCCGGGATGTTCGCCATTCCCACGCTGGCGCTACTGCCCGCGTGGTTCGTGATCGGCGCGGCGGCGCTGCTGGGGCT

GCTGGTCGGCAGCTTCCTCAACGTGGTGATCCACCGCTTACCGCGCATGATCGAACGCGAGGAGGCCAACTACATCGCCG

AGCTGCGCAACGAGCCGCTGCCGCATCCCGAGCCGTACAACCTGGTCGTGCCGCGCTCGGCCTGCCCGTCGTGCGGCCAC

CAGATCAAGGCGATCGAGAACATCCCGGTGATCAGTTGGCTGGCATTGCGCGGCCGCTGCAGCGCCTGCAAGACACCCAT

CTCCTGGCGCTATCCCGCCGTGGAACTGGTGACCTGCGTACTGACCGGCGCCTGCCTGTGGCATTTCGGACCGACCTGGG

TGGCGGTCGCCTCGGCCGCGCTGCTGTGGTTCCTGATCGCCGCCACGATGATCGACGCCGACACGCAACTGCTGCCCGAT

GCCATCACCCAACCGCTGCTGTGGCTCGGCCTGCTGGTGAACCTGTTCGACATGTTCGCGCGGCTGCCGGACGCAGTGAT

CGGCGCGATGGCCGGGTATCTGTTCCTGTGGGCCATCTACTGGGCCTACAAACTGCTGCGAGGCCGGGAGGGCATGGGCT

ACGGCGACTTCAAGCTGATGGCCGCGCTCGGTGCCTGGTTCGGCTGGCAGGCGCTGCCGTTGTTGATCCTGCTGTCGTCG

GTGGTCGGCCTGGTGTTCGGGGCGGCGCGCATCGCGCGTGGCGCCGAAAGCGACTCCCCATTTTCGTTCGGCCCGTTCAT

CGCGGGTGCCGGCGTCATCGCCCTGCTGGCCGGCCCACAGCTGGTGGCATTGACGGGACTCGCACCGCTGCTGGCGCGGT

AA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(24-129)

Type IV leader peptidase family (Peptidase_A24)

(140-247)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Vibrio cholerae strain A1552	53.962	90.444	0.488
pilD	Vibrio campbellii strain DS40M4	50.916	93.174	0.474
pilD	Neisseria gonorrhoeae MS11	50	91.468	0.457
pilD	Acinetobacter nosocomialis M2	46.992	90.785	0.427
pilD	Acinetobacter baumannii D1279779	46.992	90.785	0.427

Detailed information NTG0774590