Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   G6L41_RS05655 Genome accession   NZ_CP115924
Coordinates   1137942..1138514 (-) Length   190 a.a.
NCBI ID   WP_173992618.1    Uniprot ID   -
Organism   Agrobacterium tumefaciens strain K224     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1113409..1138514 1137942..1138514 within 0


Gene organization within MGE regions


Location: 1113409..1138514
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G6L41_RS05525 (G6L41_005525) - 1113409..1114434 (-) 1026 WP_173992569.1 DNA polymerase III subunit delta' -
  G6L41_RS05530 (G6L41_005530) tmk 1114427..1115101 (-) 675 WP_173992570.1 dTMP kinase -
  G6L41_RS05535 (G6L41_005535) - 1115239..1116411 (-) 1173 WP_173992571.1 D-alanyl-D-alanine carboxypeptidase family protein -
  G6L41_RS05540 (G6L41_005540) - 1116488..1117576 (-) 1089 WP_025593441.1 septal ring lytic transglycosylase RlpA family protein -
  G6L41_RS05545 (G6L41_005545) - 1117896..1118234 (+) 339 WP_003515252.1 hypothetical protein -
  G6L41_RS05550 (G6L41_005550) - 1118506..1119222 (+) 717 Protein_1092 IS5 family transposase -
  G6L41_RS05555 (G6L41_005555) - 1119276..1120346 (-) 1071 WP_173992572.1 acyltransferase family protein -
  G6L41_RS05560 (G6L41_005560) - 1120399..1121115 (+) 717 WP_173992573.1 SGNH/GDSL hydrolase family protein -
  G6L41_RS05565 (G6L41_005565) - 1121112..1122173 (-) 1062 WP_173992583.1 acyltransferase family protein -
  G6L41_RS05570 (G6L41_005570) - 1122243..1122491 (+) 249 WP_173992584.1 hypothetical protein -
  G6L41_RS05575 (G6L41_005575) - 1122828..1123931 (+) 1104 WP_212509568.1 O-antigen ligase family protein -
  G6L41_RS05580 (G6L41_005580) tnpA 1124353..1124763 (+) 411 WP_173993448.1 IS66-like element accessory protein TnpA -
  G6L41_RS05585 (G6L41_005585) tnpB 1124760..1125107 (+) 348 WP_034495582.1 IS66 family insertion sequence element accessory protein TnpB -
  G6L41_RS05590 (G6L41_005590) - 1125153..1126808 (+) 1656 WP_173993446.1 IS66-like element IS66 family transposase -
  G6L41_RS05595 (G6L41_005595) - 1126825..1127786 (-) 962 Protein_1101 IS3 family transposase -
  G6L41_RS05600 (G6L41_005600) - 1127838..1127963 (-) 126 Protein_1102 IS3 family transposase -
  G6L41_RS05605 (G6L41_005605) - 1128373..1128639 (-) 267 Protein_1103 integrase arm-type DNA-binding domain-containing protein -
  G6L41_RS05615 (G6L41_005615) - 1129508..1129735 (-) 228 WP_173992616.1 hypothetical protein -
  G6L41_RS05620 (G6L41_005620) - 1129751..1130014 (-) 264 WP_003515255.1 hypothetical protein -
  G6L41_RS05625 (G6L41_005625) - 1130152..1130862 (+) 711 WP_013636101.1 hypothetical protein -
  G6L41_RS05630 (G6L41_005630) - 1131011..1132525 (+) 1515 WP_003515257.1 D-alanyl-D-alanine carboxypeptidase family protein -
  G6L41_RS05635 (G6L41_005635) - 1132610..1132870 (+) 261 WP_003515258.1 hypothetical protein -
  G6L41_RS05640 (G6L41_005640) gyrA 1132964..1135756 (-) 2793 WP_065658527.1 DNA gyrase subunit A -
  G6L41_RS05645 (G6L41_005645) - 1135974..1136603 (+) 630 WP_145166293.1 MarC family protein -
  G6L41_RS05650 (G6L41_005650) - 1136727..1137875 (+) 1149 WP_065660941.1 HPP family protein -
  G6L41_RS05655 (G6L41_005655) ssb 1137942..1138514 (-) 573 WP_173992618.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 190 a.a.        Molecular weight: 20270.19 Da        Isoelectric Point: 4.7391

>NTDB_id=774471 G6L41_RS05655 WP_173992618.1 1137942..1138514(-) (ssb) [Agrobacterium tumefaciens strain K224]
MQLPVTMAGGQDDEMAGSVNKVILIGNVGADPEIRRTQDGRPIANLRIATSETWRDRNSGERKEKTEWHTVVVFNEGLCK
VVEQYVKKGAKLYIEGQLQTRKWQDQTGNDRYSTEVVLQGFNSTLTMLDGRGEGGGSRSGGDIGGGDYGSGGGNYGGGYD
QQPAARGGASRGGSQPSGGFSSDMDDDIPF

Nucleotide


Download         Length: 573 bp        

>NTDB_id=774471 G6L41_RS05655 WP_173992618.1 1137942..1138514(-) (ssb) [Agrobacterium tumefaciens strain K224]
ATGCAATTGCCGGTCACGATGGCTGGCGGACAGGATGACGAGATGGCTGGTAGCGTAAACAAGGTAATTCTGATTGGGAA
CGTTGGCGCCGATCCCGAAATTCGCCGGACGCAGGACGGCCGTCCGATCGCCAATCTGCGTATCGCCACCTCGGAGACGT
GGCGGGACCGCAACAGCGGCGAGCGCAAGGAAAAGACAGAATGGCACACGGTCGTCGTTTTCAACGAAGGCCTGTGCAAG
GTTGTTGAACAATATGTGAAAAAGGGCGCCAAGCTCTATATTGAAGGCCAGCTGCAGACGCGCAAGTGGCAGGACCAGAC
CGGTAACGACCGTTACTCCACCGAAGTGGTACTGCAGGGCTTCAACTCCACGCTGACGATGCTCGACGGTCGCGGCGAAG
GCGGCGGCAGCCGCAGCGGTGGCGACATCGGCGGTGGAGATTATGGCAGCGGCGGCGGTAACTACGGTGGCGGTTACGAC
CAGCAGCCGGCGGCCCGCGGCGGTGCCTCGCGTGGCGGCAGCCAGCCTTCCGGCGGCTTCTCCAGTGACATGGACGACGA
TATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(19-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.685

93.684

0.484
  ssb Glaesserella parasuis strain SC1401

43.75

100

0.442
  ssb Neisseria meningitidis MC58

37.968

98.421

0.374
  ssb Neisseria gonorrhoeae MS11

37.968

98.421

0.374