Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   PG915_RS07710 Genome accession   NZ_CP115920
Coordinates   1706743..1707336 (+) Length   197 a.a.
NCBI ID   WP_353498595.1    Uniprot ID   A0AAU8BN64
Organism   Vibrio chaetopteri strain CB1-14     
Function   master regulator of natural competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1701743..1712336
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PG915_RS07690 (PG915_07690) panP 1701936..1703579 (-) 1644 WP_353498591.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -
  PG915_RS07695 (PG915_07695) - 1703812..1704327 (-) 516 WP_353498592.1 hypothetical protein -
  PG915_RS07700 (PG915_07700) - 1704456..1705361 (-) 906 WP_353498593.1 lysine exporter LysO family protein -
  PG915_RS07705 (PG915_07705) - 1705450..1706373 (-) 924 WP_353498594.1 HDOD domain-containing protein -
  PG915_RS07710 (PG915_07710) tfoX 1706743..1707336 (+) 594 WP_353498595.1 TfoX/Sxy family DNA transformation protein Regulator
  PG915_RS07715 (PG915_07715) - 1707439..1707984 (-) 546 WP_353498596.1 hypothetical protein -
  PG915_RS07720 (PG915_07720) - 1708274..1708771 (-) 498 WP_353498597.1 response regulator -
  PG915_RS07725 (PG915_07725) - 1708764..1710734 (-) 1971 WP_353498598.1 ATP-binding protein -
  PG915_RS07730 (PG915_07730) - 1710881..1712161 (+) 1281 WP_353498599.1 DUF945 family protein -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 22675.01 Da        Isoelectric Point: 9.8545

>NTDB_id=774456 PG915_RS07710 WP_353498595.1 1706743..1707336(+) (tfoX) [Vibrio chaetopteri strain CB1-14]
MIEQSFYNYTTQFGESQKRSMFGGTGLFKDGAMYALISNSKVFIRGGKGLDSKLHGLQCEKFRHVKKQSTATVNYYDITH
LFEQQAPELKDLVQNSIDNSVDQHCSKNAVENRRLRDLPNMQLTLERMVKKSGIKDVKTFLELGAPRVFNRVKRTYGNDV
DVKLLWKFAGAVDGVHWKLIQDPMKQRLLEHCSQIEQ

Nucleotide


Download         Length: 594 bp        

>NTDB_id=774456 PG915_RS07710 WP_353498595.1 1706743..1707336(+) (tfoX) [Vibrio chaetopteri strain CB1-14]
ATGATAGAGCAATCTTTTTACAACTACACGACTCAATTTGGCGAATCGCAAAAACGTTCGATGTTTGGTGGCACTGGGCT
CTTCAAGGACGGCGCCATGTACGCATTGATTAGTAACAGTAAAGTGTTTATCCGTGGAGGAAAGGGCTTAGACTCTAAAC
TTCATGGTCTACAATGCGAGAAATTTCGTCATGTGAAAAAACAATCAACTGCGACGGTAAACTATTACGACATAACCCAC
TTATTTGAACAGCAAGCTCCTGAGCTTAAGGATTTAGTTCAAAACTCAATCGATAACTCAGTTGATCAGCATTGCAGTAA
GAACGCGGTCGAGAATCGCCGTTTGCGAGATTTGCCAAACATGCAACTCACGTTAGAGCGCATGGTCAAGAAGTCGGGTA
TTAAAGATGTAAAAACATTTTTGGAGCTAGGAGCACCAAGAGTGTTTAATCGAGTGAAGCGCACTTATGGCAACGATGTC
GATGTTAAGTTGTTGTGGAAGTTCGCCGGTGCAGTAGATGGGGTACATTGGAAGTTAATCCAAGATCCAATGAAGCAACG
TTTATTGGAGCATTGTTCACAAATAGAACAGTGA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(112-191)

TfoX N-terminal domain (TfoX_N)

(10-98)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

63.402

98.477

0.624
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

63.402

98.477

0.624
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

63.402

98.477

0.624
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

63.402

98.477

0.624
  tfoX Vibrio cholerae strain A1552

63.402

98.477

0.624
  tfoX Vibrio parahaemolyticus RIMD 2210633

62.5

97.462

0.609
  tfoX Vibrio campbellii strain DS40M4

60.938

97.462

0.594
  tfoX Aliivibrio fischeri ES114

54.45

96.954

0.528