Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QUC24_RS03680 Genome accession   NZ_CP128506
Coordinates   761425..761922 (+) Length   165 a.a.
NCBI ID   WP_126559062.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain Fe11-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 756425..766922
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUC24_RS03665 (QUC24_03665) bfr 756434..756898 (+) 465 WP_016852423.1 bacterioferritin -
  QUC24_RS03670 (QUC24_03670) uvrA 756969..759806 (-) 2838 WP_289393735.1 excinuclease ABC subunit UvrA Machinery gene
  QUC24_RS03675 (QUC24_03675) - 760020..761408 (+) 1389 WP_003103910.1 MFS transporter -
  QUC24_RS03680 (QUC24_03680) ssb 761425..761922 (+) 498 WP_126559062.1 single-stranded DNA-binding protein Machinery gene
  QUC24_RS03685 (QUC24_03685) pchA 762011..763441 (-) 1431 WP_003118152.1 isochorismate synthase PchA -
  QUC24_RS03690 (QUC24_03690) pchB 763438..763743 (-) 306 WP_003106950.1 isochorismate lyase PchB -
  QUC24_RS03695 (QUC24_03695) pchC 763743..764498 (-) 756 WP_126559063.1 pyochelin biosynthesis editing thioesterase PchC -
  QUC24_RS03700 (QUC24_03700) pchD 764495..766138 (-) 1644 WP_019371421.1 pyochelin biosynthesis salicyl-AMP ligase PchD -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18573.50 Da        Isoelectric Point: 5.2781

>NTDB_id=774225 QUC24_RS03680 WP_126559062.1 761425..761922(+) (ssb) [Pseudomonas aeruginosa strain Fe11-1]
MARGVNKVILVGNVGGDPETRYMPNGNAVTNITLATSESWKDKQTGQQQERTEWHRVVFFGRLAEIAGEYLRKGSQVYVE
GSLRTRKWQGQDGQDRYTTEIVVDINGNMQLLGGRPSGDDSQRAPREPMQRPQQAPQQQSRPAPQQQLAPQPAQDYDSFD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=774225 QUC24_RS03680 WP_126559062.1 761425..761922(+) (ssb) [Pseudomonas aeruginosa strain Fe11-1]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTACATGCCCAACGGCAA
TGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGACAAGCAGACCGGCCAGCAACAGGAGCGCACCGAAT
GGCACCGCGTGGTGTTCTTCGGCCGCCTGGCGGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAA
GGCAGCCTGCGCACCCGCAAGTGGCAGGGCCAGGACGGTCAGGATCGCTACACCACCGAGATCGTGGTCGACATCAACGG
CAACATGCAGTTGCTCGGCGGCCGCCCCTCCGGCGACGATTCGCAGCGCGCCCCGCGCGAGCCCATGCAGCGCCCGCAGC
AGGCCCCGCAGCAGCAGTCGCGTCCGGCCCCGCAGCAGCAACTGGCGCCGCAACCGGCCCAGGACTACGACAGCTTCGAC
GACGACATTCCGTTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(5-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.659

100

0.636
  ssb Glaesserella parasuis strain SC1401

51.934

100

0.57
  ssb Neisseria meningitidis MC58

47.191

100

0.509
  ssb Neisseria gonorrhoeae MS11

46.927

100

0.509