Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   PCM89_RS01685 Genome accession   NZ_CP115887
Coordinates   387619..388122 (+) Length   167 a.a.
NCBI ID   WP_000934799.1    Uniprot ID   A0A7U7IE99
Organism   Staphylococcus aureus strain C308     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 382619..393122
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCM89_RS01655 (PCM89_01655) - 383558..384403 (+) 846 WP_001670258.1 ParB/RepB/Spo0J family partition protein -
  PCM89_RS01660 (PCM89_01660) - 384557..385438 (+) 882 WP_000373076.1 mechanosensitive ion channel family protein -
  PCM89_RS01665 (PCM89_01665) - 385468..385671 (+) 204 WP_000157348.1 DUF951 domain-containing protein -
  PCM89_RS01670 (PCM89_01670) ychF 385683..386780 (+) 1098 WP_001218728.1 redox-regulated ATPase YchF -
  PCM89_RS01675 (PCM89_01675) - 386866..387057 (-) 192 WP_001052483.1 hypothetical protein -
  PCM89_RS01680 (PCM89_01680) rpsF 387302..387598 (+) 297 WP_001261460.1 30S ribosomal protein S6 -
  PCM89_RS01685 (PCM89_01685) ssbA 387619..388122 (+) 504 WP_000934799.1 single-stranded DNA-binding protein Machinery gene
  PCM89_RS01690 (PCM89_01690) rpsR 388174..388416 (+) 243 WP_000897044.1 30S ribosomal protein S18 -
  PCM89_RS01695 (PCM89_01695) - 388682..389620 (-) 939 WP_061739073.1 Abi family protein -
  PCM89_RS01700 (PCM89_01700) - 389659..390383 (-) 725 Protein_337 tyrosine-type recombinase/integrase -
  PCM89_RS01705 (PCM89_01705) - 390589..391200 (+) 612 WP_000473140.1 exotoxin beta-grasp domain-containing protein -
  PCM89_RS01710 (PCM89_01710) - 391569..391937 (+) 369 WP_000849173.1 YxeA family protein -
  PCM89_RS01715 (PCM89_01715) - 392118..392690 (+) 573 WP_000769722.1 PepSY domain-containing protein -
  PCM89_RS01720 (PCM89_01720) - 392829..393092 (-) 264 WP_001055898.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18539.12 Da        Isoelectric Point: 4.7305

>NTDB_id=774149 PCM89_RS01685 WP_000934799.1 387619..388122(+) (ssbA) [Staphylococcus aureus strain C308]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=774149 PCM89_RS01685 WP_000934799.1 387619..388122(+) (ssbA) [Staphylococcus aureus strain C308]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGGC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7IE99

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.341

100

0.689
  ssb Latilactobacillus sakei subsp. sakei 23K

54.971

100

0.563
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

63.473

0.371
  ssb Glaesserella parasuis strain SC1401

34.463

100

0.365