Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   PBS85_RS07670 Genome accession   NZ_CP115874
Coordinates   1652959..1653585 (+) Length   208 a.a.
NCBI ID   WP_017384804.1    Uniprot ID   A0AA37AJW2
Organism   Enterobacter hormaechei subsp. steigerwaltii strain WYTS.MG41     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1647959..1658585
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PBS85_RS07650 (PBS85_07650) - 1648359..1650119 (-) 1761 WP_033487273.1 AAA family ATPase -
  PBS85_RS07655 (PBS85_07655) matP 1650306..1650758 (+) 453 WP_006809347.1 macrodomain Ter protein MatP -
  PBS85_RS07660 (PBS85_07660) ompA 1650824..1651876 (-) 1053 WP_017694761.1 porin OmpA -
  PBS85_RS07665 (PBS85_07665) sulA 1652233..1652742 (-) 510 WP_026094322.1 SOS-induced cell division inhibitor SulA -
  PBS85_RS07670 (PBS85_07670) sxy/tfoX 1652959..1653585 (+) 627 WP_017384804.1 TfoX/Sxy family DNA transformation protein Regulator
  PBS85_RS07675 (PBS85_07675) yccS 1653542..1655704 (-) 2163 WP_015570895.1 YccS family putative transporter -
  PBS85_RS07680 (PBS85_07680) - 1655723..1656169 (-) 447 WP_003858149.1 YccF domain-containing protein -
  PBS85_RS07685 (PBS85_07685) helD 1656292..1658346 (+) 2055 WP_033487272.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 24018.63 Da        Isoelectric Point: 9.4592

>NTDB_id=774128 PBS85_RS07670 WP_017384804.1 1652959..1653585(+) (sxy/tfoX) [Enterobacter hormaechei subsp. steigerwaltii strain WYTS.MG41]
MKKISYDRIYQSQEYLSPLGEIHHRALFGGYTLAVDEAVFAMVSDGELYLRACEQSAKYCVKNASSFLTLMKRGRPVLLN
YYRVDEGLWQNREKLLQLSSFALDAARKERYQRHQRNRLKDLPNLTFQIEVLLMEAGITNEETLRQLGAKTSWLKMRSKN
KALSIRVLFALEGAIEGLHEAALPADIRRELMEWFNALPESQGHHSAR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=774128 PBS85_RS07670 WP_017384804.1 1652959..1653585(+) (sxy/tfoX) [Enterobacter hormaechei subsp. steigerwaltii strain WYTS.MG41]
ATGAAAAAGATATCTTATGATCGGATTTATCAATCTCAGGAATACCTCTCTCCGCTGGGCGAAATTCATCATCGCGCCCT
GTTTGGCGGTTATACCCTGGCCGTGGATGAAGCGGTGTTCGCGATGGTGTCTGACGGCGAGCTGTACCTTCGCGCCTGTG
AGCAAAGTGCAAAATACTGTGTAAAAAACGCCTCCTCTTTTCTGACCCTGATGAAACGAGGACGGCCAGTGCTGCTTAAT
TACTACCGTGTGGATGAAGGTCTGTGGCAAAACAGGGAAAAGCTGCTTCAGCTCTCCTCGTTTGCGCTCGATGCCGCCAG
GAAAGAGCGCTACCAGCGCCATCAGCGTAACCGGCTTAAGGATCTGCCGAACCTGACCTTTCAGATTGAGGTCCTGCTTA
TGGAGGCGGGCATTACCAATGAAGAGACGCTACGACAGTTGGGGGCGAAGACGAGCTGGCTGAAAATGCGCTCTAAGAAT
AAAGCGCTGAGTATCCGGGTATTGTTCGCGCTTGAAGGCGCCATCGAAGGGTTACATGAAGCGGCACTCCCGGCGGATAT
TCGCCGGGAGCTTATGGAGTGGTTTAATGCGCTGCCTGAGTCGCAGGGCCATCATTCCGCCAGGTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.911

97.115

0.572