Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PG878_RS13565 Genome accession   NZ_CP115873
Coordinates   3153193..3153714 (-) Length   173 a.a.
NCBI ID   WP_209031722.1    Uniprot ID   -
Organism   Xanthomonas hawaiiensis strain A6251     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3148193..3158714
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PG878_RS13545 (PG878_13530) - 3148276..3149019 (-) 744 WP_209031726.1 DUF1080 domain-containing protein -
  PG878_RS13550 (PG878_13535) - 3149063..3149635 (-) 573 WP_209031725.1 gluconate 2-dehydrogenase subunit 3 family protein -
  PG878_RS13555 (PG878_13540) - 3149635..3151320 (-) 1686 WP_209031724.1 GMC family oxidoreductase -
  PG878_RS13560 (PG878_13545) - 3151351..3152247 (-) 897 WP_209031723.1 TIM barrel protein -
  PG878_RS13565 (PG878_13550) ssb 3153193..3153714 (-) 522 WP_209031722.1 single-stranded DNA-binding protein Machinery gene
  PG878_RS13570 (PG878_13555) - 3153996..3154994 (+) 999 WP_209031721.1 polyprenyl synthetase family protein -
  PG878_RS13575 (PG878_13560) - 3155226..3156029 (-) 804 WP_209031720.1 dienelactone hydrolase family protein -
  PG878_RS13580 (PG878_13565) murD 3156109..3157557 (-) 1449 WP_209031719.1 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18606.54 Da        Isoelectric Point: 5.3243

>NTDB_id=774118 PG878_RS13565 WP_209031722.1 3153193..3153714(-) (ssb) [Xanthomonas hawaiiensis strain A6251]
MARGINKVILVGNLGNDPDTKYTQAGMAITRISLATTSVRKDRDGNQQERTEWHRVVFFGKLGEIAGEYLRKGSSVYVEG
SIRYDKYTGQDGVEKYSTDIVADEMQMLGGRGEGGGGGMGGGDRPQRSAPPRQERSGMGGGGGGGQDYAPRRQQPAPQQS
APMDDFADDDIPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=774118 PG878_RS13565 WP_209031722.1 3153193..3153714(-) (ssb) [Xanthomonas hawaiiensis strain A6251]
ATGGCCCGCGGCATCAACAAAGTCATCCTCGTCGGCAACCTCGGCAACGATCCCGACACCAAGTACACCCAGGCCGGCAT
GGCCATCACCCGCATCAGCCTGGCCACCACCAGCGTGCGCAAGGACCGCGACGGCAACCAGCAGGAACGCACCGAGTGGC
ATCGCGTCGTTTTCTTCGGAAAGCTGGGCGAAATCGCCGGCGAGTACCTGCGCAAGGGCAGCTCGGTCTACGTCGAAGGC
TCGATCCGCTACGACAAGTACACCGGTCAGGACGGCGTGGAGAAGTACTCCACCGACATCGTCGCCGACGAGATGCAGAT
GCTTGGCGGCCGCGGCGAGGGCGGTGGCGGCGGCATGGGCGGCGGCGATCGTCCGCAGCGCTCGGCACCGCCGCGCCAGG
AGCGTTCCGGCATGGGCGGTGGCGGTGGTGGCGGGCAGGATTACGCGCCGCGCCGGCAGCAGCCGGCCCCGCAGCAGTCG
GCGCCGATGGACGACTTCGCGGACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

44.681

100

0.486
  ssb Glaesserella parasuis strain SC1401

44.809

100

0.474
  ssb Neisseria meningitidis MC58

46.023

100

0.468
  ssb Neisseria gonorrhoeae MS11

46.023

100

0.468